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SCNpilot_expt_1000_bf_scaffold_3247_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3247_curated_1
unknown

Not on your lists

1..72
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3247_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

331..1665
DNA (1335bp) protein (445aa)
nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit {ECO:0000313|EMBL:CCB66002.1}; EC=1.17.4.1 {ECO:0000313|EMBL:CCB66002.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380B55C
SCNpilot_expt_1000_bf_scaffold_3247_curated_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1762..2493)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9DX32_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09654.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3247_curated_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2495..2917)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRX0_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK55508.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_5
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3079..4512)
DNA (1434bp) protein (478aa)
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
SCNpilot_expt_1000_bf_scaffold_3247_curated_6
unknown

Not on your lists

comp(5022..5153)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3247_curated_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5467..6411)
DNA (945bp) protein (315aa)
Alpha/beta hydrolase fold protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRZ6_9RHIZ
Alpha/beta hydrolase {ECO:0000313|EMBL:KGM34471.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_3247_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6711..7097
DNA (387bp) protein (129aa)
FoF1 ATP synthase subunit I n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BFM3_9RHIZ
FoF1 ATP synthase subunit I
FoF1 ATP synthase subunit I {ECO:0000313|EMBL:AGK59266.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_9
bacterium YEK0313, Bacteria

Not on your lists

7111..7875
DNA (765bp) protein (255aa)
ATP synthase F0F1 subunit A (EC:3.6.3.14); K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] rbh
ATP synthase subunit a n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGI0_MOBAS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7934..8161
DNA (228bp) protein (76aa)
ATP synthase F0 subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase F0, C subunit n=3 Tax=Methylobacterium RepID=B1LWM2_METRJ
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_11
unknown

Not on your lists

8392..8826
DNA (435bp) protein (145aa)
H+transporting two-sector ATPase B/B' subunit; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATPase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAY1_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000313|EMBL:CPR22430.1}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8856..9341
DNA (486bp) protein (162aa)
F0F1 ATP synthase subunit b (atpF) (EC:3.6.3.14); K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
F0F1 ATP synthase subunit B n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD41_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_13
unknown

Not on your lists

comp(9434..9727)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3247_curated_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9855..10661)
DNA (807bp) protein (269aa)
inositol mono-phosphatase (suhB-like) (EC:3.1.3.25)
Inositol monophosphatase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFZ7_9RHIZ
Inositol monophosphatase {ECO:0000313|EMBL:AHB49463.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_3247_curated_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10963..11619)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370D88F
Uncharacterized protein {ECO:0000313|EMBL:AHB48426.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3247_curated_16
unknown

Not on your lists

12040..12765
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3247_curated_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12731..13513)
DNA (783bp) protein (261aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A7I4_9PROT
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EHL96323.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3247_curated_18
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13668..14393
DNA (726bp) protein (242aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ATPase AAA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SG86_9RHIZ
UvrD/REP helicase
Displaying 18 items

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