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SCNpilot_expt_1000_bf_scaffold_8042_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8042_curated_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..493)
DNA (492bp) protein (164aa)
FAD-dependent dehydrogenase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLD6_AZOSU
FAD-dependent dehydrogenase; K07137
FAD-dependent dehydrogenase {ECO:0000313|EMBL:AEV24465.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_2
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(497..1429)
DNA (933bp) protein (311aa)
6-phosphogluconate dehydrogenase, NAD-binding protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U261_9PROT
6-phosphogluconate dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:EDP61641.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_3
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1457..2662)
DNA (1206bp) protein (402aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KJB95104.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KJB95104.1};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
aspB; aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NR00_AZOS1
SCNpilot_expt_1000_bf_scaffold_8042_curated_4
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2729..2929)
DNA (201bp) protein (67aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2); K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WUT7_9RHIZ
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:EIZ84193.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3795..3974)
DNA (180bp) protein (60aa)
lysine--tRNA ligase; K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysyl-tRNA synthetase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U1C3_9RHIZ
Lysyl-tRNA synthetase {ECO:0000313|EMBL:ENN84148.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_6
unknown

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4285..4614
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037528E8
SCNpilot_expt_1000_bf_scaffold_8042_curated_7
unknown

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4636..4827
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8042_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4963..5532
DNA (570bp) protein (190aa)
Elongation factor P n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J800_HYPSM
efp; elongation factor P (EF-P); K02356 elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5701..7641
DNA (1941bp) protein (647aa)
Beta-lactamase-like n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J187_RHOP2
Beta-lactamase-like
Beta-lactamase-like {ECO:0000313|EMBL:ABD05773.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7707..8396
DNA (690bp) protein (230aa)
UPI0003CFB7F3 related cluster n=1 Tax=unknown RepID=UPI0003CFB7F3
aldolase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_8042_curated_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8610..9605
DNA (996bp) protein (332aa)
phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Xanthine dehydrogenase YagR molybdenum-binding subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I951_9BRAD
Xanthine dehydrogenase YagR molybdenum-binding subunit {ECO:0000313|EMBL:ERF80035.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_12
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..9949)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QHD2_RALPI
Uncharacterized protein {ECO:0000313|EMBL:AGW90444.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_1000_bf_scaffold_8042_curated_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9963..10571)
DNA (609bp) protein (203aa)
Fumarylacetoacetate (FAA) hydrolase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLZ5_9RHIZ
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KFG66890.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
FAA_hydrolase superfamily
SCNpilot_expt_1000_bf_scaffold_8042_curated_14
unknown

Not on your lists

11894..12100
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 14 items

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