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SCNpilot_expt_1000_bf_scaffold_4277_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4277_curated_1
unknown

Not on your lists

comp(100..297)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4277_curated_2
unknown

Not on your lists

462..596
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4277_curated_3
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(600..1202)
DNA (603bp) protein (201aa)
Glutathione S-transferase {ECO:0000313|EMBL:ETY78091.1}; EC=2.5.1.18 {ECO:0000313|EMBL:ETY78091.1};; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034BB5DE
glutathione S-transferase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4277_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1385..1846
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A3B57
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_4277_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1991..2530
DNA (540bp) protein (180aa)
CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003650ABC
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:AHB48122.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4277_curated_6
unknown

Not on your lists

2593..2751
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4277_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2817..3935
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000382621A
Uncharacterized protein {ECO:0000313|EMBL:AHB48123.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4277_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3932..4633
DNA (702bp) protein (234aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDU2_9RHIZ
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:AHB48124.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
chromosomal replication initiator, DnaA
SCNpilot_expt_1000_bf_scaffold_4277_curated_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4735..6942
DNA (2208bp) protein (736aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
polyphosphate kinase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368C84E
SCNpilot_expt_1000_bf_scaffold_4277_curated_10
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6939..7832
DNA (894bp) protein (298aa)
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Exopolyphosphatase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8B8_HYPSM
Exopolyphosphatase {ECO:0000313|EMBL:CCB67321.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4277_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7814..8512
DNA (699bp) protein (233aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035EA19A
Ppx/GppA phosphatase {ECO:0000313|EMBL:ADJ24637.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_4277_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8737..9630
DNA (894bp) protein (298aa)
Molecular chaperone DnaJ n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCB3_9RHIZ
Molecular chaperone DnaJ {ECO:0000313|EMBL:AHB48127.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
molecular chaperone DnaJ
SCNpilot_expt_1000_bf_scaffold_4277_curated_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9637..10527)
DNA (891bp) protein (297aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
16S rRNA methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEB1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4277_curated_14
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10520..11578)
DNA (1059bp) protein (353aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000362F336
SCNpilot_expt_1000_bf_scaffold_4277_curated_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11612..12955)
DNA (1344bp) protein (448aa)
SurA domain-containing protein; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D359D
Peptidylprolyl isomerase {ECO:0000313|EMBL:AHB48820.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4277_curated_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13168..14838
DNA (1671bp) protein (557aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002F1B88C
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_4277_curated_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14849..15100)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AG89_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KFG70610.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
Displaying 17 items

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