ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8317_curated

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8317_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..494
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGF2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB49613.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8317_curated_2
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

525..1232
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TDZ4_PARBH
Uncharacterized protein {ECO:0000313|EMBL:KGB57435.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8317_curated_3
unknown

Not on your lists

comp(1391..1963)
DNA (573bp) protein (191aa)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00464, ECO:0000313|EMBL:CPR18115.1}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00464, ECO:0000313|EMBL:CPR18115.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
S-adenosylmethionine decarboxylase-like protein; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036FD867
SCNpilot_expt_1000_bf_scaffold_8317_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2192..3532)
DNA (1341bp) protein (447aa)
Membrane assembly protein AsmA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGY1_9RHIZ
Membrane assembly protein AsmA {ECO:0000313|EMBL:AHB49757.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
AsmA family protein; K07289 AsmA protein
SCNpilot_expt_1000_bf_scaffold_8317_curated_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4551..6560)
DNA (2010bp) protein (670aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
parE; DNA topoisomerase IV subunit B (EC:5.99.1.-); K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase IV subunit B n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036A8560
SCNpilot_expt_1000_bf_scaffold_8317_curated_6
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6788..7063)
DNA (276bp) protein (92aa)
glutathione S-transferase domain; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z999_METPB
Glutathione S-transferase domain {ECO:0000313|EMBL:ACB80505.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Displaying 6 items

View Taxonomy