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SCNpilot_expt_1000_bf_scaffold_3696_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3696_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..240
DNA (240bp) protein (80aa)
Ankyrin repeat-containing protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYF4_HYPDA
ankyrin repeat-containing protein
Ankyrin repeat-containing protein {ECO:0000313|EMBL:ADJ23406.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_3696_curated_2
R_Saccharibacteria_45_15, Candidatus Saccharibacteria, Bacteria

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247..471
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000362D658
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Saccharibacteria_45_15_curated
SCNpilot_expt_1000_bf_scaffold_3696_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(504..926)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEF9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB48440.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3696_curated_4
unknown

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1033..1635
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3696_curated_5
Leptospira meyeri, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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1632..2339
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Leptospira meyeri serovar Hardjo str. Went 5 RepID=K5CE64_LEPME
Uncharacterized protein {ECO:0000313|EMBL:EKJ87610.1}; TaxID=1193051 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira meyeri serovar Hardjo str. Went 5.;"
SCNpilot_expt_1000_bf_scaffold_3696_curated_6
unknown

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comp(2343..4295)
DNA (1953bp) protein (651aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Phosphomethylpyrimidine synthase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRW2_HYPDA
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
SCNpilot_expt_1000_bf_scaffold_3696_curated_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4292..4849)
DNA (558bp) protein (186aa)
hypothetical protein FdumT_02058 id=4225911 bin=GWC2_Alphaproteobacteria_42_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Uncharacterized protein {ECO:0000313|EMBL:BAQ18404.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3696_curated_8
unknown

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5035..7017
DNA (1983bp) protein (661aa)
protein meaA n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370B647
Protein MeaA {ECO:0000313|EMBL:CPR17681.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
methylmalonyl-CoA mutase large subunit
SCNpilot_expt_1000_bf_scaffold_3696_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7326..7607)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI000364BD52
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK58585.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Displaying 9 items

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