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SCNpilot_expt_1000_bf_scaffold_5870_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5870_curated_1
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..835)
DNA (834bp) protein (278aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UPI7_9RHIZ
Potassium-activated aldehyde dehydrogenase, mitochondrial {ECO:0000313|EMBL:GAJ37970.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_expt_1000_bf_scaffold_5870_curated_2
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

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comp(988..1479)
DNA (492bp) protein (164aa)
glyoxalase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003619AB3
Glyoxalase {ECO:0000313|EMBL:AKC83745.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K07104
SCNpilot_expt_1000_bf_scaffold_5870_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1686..2192
DNA (507bp) protein (169aa)
Fur family transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA46_9RHIZ
Fur family transcriptional regulator {ECO:0000313|EMBL:AHB47616.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
transcriptional regulatory protein Ferric uptake; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_5870_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2162..3076
DNA (915bp) protein (305aa)
Zinc import ATP-binding protein ZnuC {ECO:0000256|HAMAP-Rule:MF_01725}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01725};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-]
Zinc transporter n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC60_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5870_curated_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3450..4793)
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI0_HYPSM
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:CCB63870.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5870_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4972..5667)
DNA (696bp) protein (232aa)
Recombinase RecR n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SB12_9RHIZ
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
recombination protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_5870_curated_7
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5609..6694)
DNA (1086bp) protein (362aa)
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5]
Threonine aldolase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QKB2_RALPI
SCNpilot_expt_1000_bf_scaffold_5870_curated_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6846..7379)
DNA (534bp) protein (178aa)
Lipolytic protein G-D-S-L family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ET23_METSB
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ACK51161.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5870_curated_9
unknown

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comp(7473..7718)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5870_curated_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7676..8767)
DNA (1092bp) protein (364aa)
OpgC protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ET24_METSB
OpgC protein
OpgC protein {ECO:0000313|EMBL:ACK51162.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5870_curated_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8855..10525)
DNA (1671bp) protein (557aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003711D70
RND transporter {ECO:0000313|EMBL:AHB49205.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
membrane transporter; K07003
Displaying 11 items

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