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SCNpilot_expt_1000_bf_scaffold_6381_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6381_curated_1
unknown

Not on your lists

comp(66..314)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6381_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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515..1402
DNA (888bp) protein (296aa)
von Willebrand factor type A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAK2_HYPSM
von Willebrand factor A
von Willebrand factor type A {ECO:0000313|EMBL:CCB63795.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1648..2130
DNA (483bp) protein (161aa)
von Willebrand factor type A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAK2_HYPSM
von Willebrand factor A
von Willebrand factor type A {ECO:0000313|EMBL:CCB63795.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2130..3062
DNA (933bp) protein (311aa)
von Willebrand factor type A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAK2_HYPSM
von Willebrand factor A
von Willebrand factor type A {ECO:0000313|EMBL:CCB63795.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3163..3648)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2T6_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56482.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_6
unknown

Not on your lists

3728..4006
DNA (279bp) protein (93aa)
Membrane protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGC9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21134.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6381_curated_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4415..5173
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1Y8_STAND
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADH87604.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5581..7071)
DNA (1491bp) protein (497aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8); K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8]
Putative aldehyde dehydrogenase n=1 Tax=Paracoccus methylutens RepID=A7UBP5_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_6381_curated_9
unknown

Not on your lists

comp(7342..8025)
DNA (684bp) protein (228aa)
Peptidase S16 n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAB9_9RHIZ
Putative Lon family ATP-dependent protease {ECO:0000313|EMBL:CPR17315.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
peptidase S16
SCNpilot_expt_1000_bf_scaffold_6381_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8074..8985)
DNA (912bp) protein (304aa)
Thioredoxin n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBH4_9RHIZ
Thioredoxin {ECO:0000313|EMBL:AHB47380.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
thioredoxin; K05838 putative thioredoxin
SCNpilot_expt_1000_bf_scaffold_6381_curated_11
unknown

Not on your lists

comp(9022..9531)
DNA (510bp) protein (170aa)
PrdX-deacylase domain-containing protein 1 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGA2_HYPSM
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:CPR17310.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
prdxdd; PrdX-deacylase domain-containing protein 1
SCNpilot_expt_1000_bf_scaffold_6381_curated_12
unknown

Not on your lists

comp(11512..11640)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6381_curated_13
unknown

Not on your lists

11873..12013
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6381_curated_14
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12365..13048
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:398 RepID=R7A919_9ACTN
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_6381_curated_15
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13045..13206
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Burkholderia thailandensis RepID=UPI00016A9918
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50248.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_16
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13264..16308
DNA (3045bp) protein (1015aa)
hypothetical protein n=1 Tax=Burkholderia pseudomallei RepID=UPI00016ABE83
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50248.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_1000_bf_scaffold_6381_curated_17
unknown

Not on your lists

16954..17112
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6381_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17119..17970)
DNA (852bp) protein (284aa)
Lactate dehydrogenase-related dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
2-hydroxyacid dehydrogenase, putative n=1 Tax=alpha proteobacterium BAL199 RepID=A8TU17_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_6381_curated_19
unknown

Not on your lists

comp(18405..18788)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6381_curated_20
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18951..19190
DNA (240bp) protein (80aa)
Major facilitator superfamily (MFS) drug efflux pump, EmrB/QacA subfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TVH3_9PROT
Major facilitator superfamily (MFS) drug efflux pump, EmrB/QacA subfamily protein {ECO:0000313|EMBL:EDP63575.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Displaying 20 items

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