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SCNpilot_expt_1000_bf_scaffold_3048_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3048_curated_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..413
DNA (411bp) protein (137aa)
RND efflux transporter, HAE1 family, translocase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIJ3_HYPSM
HAE1 family RND efflux transporter translocase subunit
RND efflux transporter, HAE1 family, translocase subunit {ECO:0000313|EMBL:CCB66990.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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760..1746
DNA (987bp) protein (329aa)
Periplasmic solute binding protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MQ7_RHOP5
periplasmic solute binding protein; K11707 manganese/zinc/iron transport system substrate-binding protein
Periplasmic solute binding protein {ECO:0000313|EMBL:ABJ06777.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1755..2567
DNA (813bp) protein (271aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MQ8_RHOP5
ABC transporter-like protein; K11710 manganese/zinc/iron transport system ATP- binding protein
ABC transporter related {ECO:0000313|EMBL:ABJ06776.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2580..3788
DNA (1209bp) protein (403aa)
ABC-3 protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MQ9_RHOP5
ABC-3 protein; K11708 manganese/zinc/iron transport system permease protein
ABC-3 protein {ECO:0000313|EMBL:ABJ06775.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3785..4714
DNA (930bp) protein (310aa)
ABC-3 protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MR0_RHOP5
ABC-3 protein; K11709 manganese/zinc/iron transport system permease protein
ABC-3 protein {ECO:0000313|EMBL:ABJ06774.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(4723..5694)
DNA (972bp) protein (324aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase id=3352297 bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_expt_1000_bf_scaffold_3048_curated_7
unknown

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comp(5954..6148)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3048_curated_8
unknown

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comp(6145..6387)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3048_curated_9
bacterium YEK0313, Bacteria

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comp(6782..7540)
DNA (759bp) protein (253aa)
Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TN73_MESCW
Nitrilotriacetate monooxygenase component A {ECO:0000313|EMBL:CEJ15284.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A
SCNpilot_expt_1000_bf_scaffold_3048_curated_10
unknown

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7836..8039
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3048_curated_11
unknown

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comp(8369..8680)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3048_curated_12
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8817..9953
DNA (1137bp) protein (379aa)
C4-dicarboxylate ABC transporter n=1 Tax=Bradyrhizobium japonicum RepID=UPI000364A4F4
putative substrate-binding component of transporter
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_3048_curated_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10065..10661
DNA (597bp) protein (199aa)
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003819131
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:EJZ29351.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
putative transporter dctQ related transmembrane protein
SCNpilot_expt_1000_bf_scaffold_3048_curated_14
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11697..11981
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000365AD24
TRAP C4-dicarboxylate transport system permease DctM
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_3048_curated_15
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12010..13386
DNA (1377bp) protein (459aa)
Amidase {ECO:0000313|EMBL:EJZ29353.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
Amidase id=4757273 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
SCNpilot_expt_1000_bf_scaffold_3048_curated_16
R_NC10_66_22, NC10, Bacteria

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13383..13553
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003703AEB
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_expt_1000_bf_scaffold_3048_curated_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13630..14550)
DNA (921bp) protein (307aa)
OmpA/MotB domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BFD4_9RHIZ
OmpA/MotB domain-containing protein
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:AGK59161.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_3048_curated_18
unknown

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comp(14532..14795)
DNA (264bp) protein (88aa)

This feature has no annotations

Displaying 18 items

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