ggKbase home page

SCNpilot_expt_1000_bf_scaffold_10010_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10010_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..845)
DNA (843bp) protein (281aa)
Anthranilate synthase subunit I {ECO:0000313|EMBL:AHB48394.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AHB48394.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
trpE; anthranilate synthase, component I, chorismate binding (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase subunit I n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEL0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_10010_curated_2
unknown

Not on your lists

comp(994..1365)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10010_curated_3
unknown

Not on your lists

1377..2300
DNA (924bp) protein (308aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B625F
Exodeoxyribonuclease III {ECO:0000313|EMBL:CPR20410.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_10010_curated_4
unknown

Not on your lists

comp(2324..3439)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDG6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR20408.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Sel1 domain-containing protein repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_10010_curated_5
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4233..5012
DNA (780bp) protein (260aa)
ABC transporter-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter related n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WVH4_RHOS5
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJV08613.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
SCNpilot_expt_1000_bf_scaffold_10010_curated_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5109..6128
DNA (1020bp) protein (340aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035EBA4F
Glutamate Aspartate periplasmic binding protein GltI {ECO:0000313|EMBL:ESR23340.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
cationic amino acid ABC transporter periplasmic binding protein; K09969 general L-amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_10010_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6218..7408
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000366F1A3
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:KFC69076.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aapQ; General L-amino acid transport system permease protein aapQ
SCNpilot_expt_1000_bf_scaffold_10010_curated_8
unknown

Not on your lists

comp(7246..7680)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10010_curated_9
unknown

Not on your lists

comp(7864..8127)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10010_curated_10
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8243..8524
DNA (282bp) protein (94aa)
General L-amino acid transport system permease protein AapM n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HAK8_RHIRD
aapM; general L-amino acid transport system permease AapM; K09971 general L-amino acid transport system permease protein
General L-amino acid transport system permease protein AapM {ECO:0000313|EMBL:ADY64516.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_10010_curated_11
bacterium YEK0313, Bacteria

Not on your lists

9329..9772
DNA (444bp) protein (148aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002EA2BDD
Sulfite exporter TauE/SafE {ECO:0000313|EMBL:CEJ09921.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_10010_curated_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10174..10884)
DNA (711bp) protein (237aa)
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8U5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_10010_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11146..11727
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD70_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67960.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_10010_curated_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11991..12551
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTI4_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KFG70473.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_10010_curated_15
unknown

Not on your lists

comp(12976..13047)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 15 items

View Taxonomy