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SCNpilot_expt_1000_bf_scaffold_4180_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4180_curated_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..307)
DNA (306bp) protein (102aa)
oxidoreductase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxidoreductase putative coproporphyrinogen III oxidase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFF9_HYPSM
Putative oxidoreductase putative coproporphyrinogen III oxidase {ECO:0000313|EMBL:CCB67915.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_2
unknown

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565..873
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4180_curated_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1286..1909)
DNA (624bp) protein (208aa)
Ham1 family protein; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hy
Non-canonical purine NTP pyrophosphatase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXK2_HYPDA
SCNpilot_expt_1000_bf_scaffold_4180_curated_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1921..2349)
DNA (429bp) protein (143aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEV2_HYPSM
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CCB67913.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2377..3615)
DNA (1239bp) protein (413aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Argininosuccinate synthase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHP6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4180_curated_6
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3729..4019)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T7W8_BURPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD21284.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_7
unknown

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comp(4028..4576)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DEF8_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:CPR19388.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4180_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4668..5132)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHC1_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64375.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_9
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5325..6299
DNA (975bp) protein (325aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7X8_RHOVT
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ADP70832.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6591..7109)
DNA (519bp) protein (173aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Acidovorax sp. CF316 RepID=J1ECW3_9BURK
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJE50084.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4180_curated_11
unknown

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comp(7385..7990)
DNA (606bp) protein (202aa)
NADH-ubiquinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C1F04
NADH-quinone oxidoreductase chain 2 {ECO:0000313|EMBL:CPR20934.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8088..8423)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J904_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66112.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8875..10176
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380BB04
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64529.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..11512)
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378228E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57515.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12005..13222)
DNA (1218bp) protein (406aa)
aminotransferase (EC:2.6.1.-) rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41095.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_4180_curated_16
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13271..14164)
DNA (894bp) protein (298aa)
Jannaschia aquimarina strain GSW-M26 jaqu_contig000008, whole genome shotgun sequence {ECO:0000313|EMBL:KIT17935.1}; EC=4.1.3.32 {ECO:0000313|EMBL:KIT17935.1};; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
Carboxyvinyl-carboxyphosphonatephosphorylmutase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LHN7_DINSH
carboxyvinyl-carboxyphosphonatephosphorylmutase
SCNpilot_expt_1000_bf_scaffold_4180_curated_17

Not on your lists

14325..15125
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_005I08 RepID=B3T0I2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ06091.1}; TaxID=455507 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_005I08.;"
glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
SCNpilot_expt_1000_bf_scaffold_4180_curated_18
unknown

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comp(15432..15707)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4180_curated_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16619..18106
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037F8DC8
50S ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:AHB47335.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4180_curated_20

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18122..18544
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7FQ04_9RHOB
Marine sediment metagenome DNA, contig: S01H1_C01121 {ECO:0000313|EMBL:GAF85642.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
Displaying 20 items

View Taxonomy