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SCNpilot_expt_1000_bf_scaffold_7740_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7740_curated_1
unknown

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3..875
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDB3_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CPR22068.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(955..2379)
DNA (1425bp) protein (475aa)
Putative TRAP family transmembrane transporter protein id=4662981 bin=GWF2_Methylomirabilis_70_14 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative TRAP family transmembrane transporter protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7740_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2376..2927)
DNA (552bp) protein (184aa)
Putative transporter DctQ-related transmembrane protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MI80_RHISN
putative transporter DctQ-related transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_7740_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3025..4134)
DNA (1110bp) protein (370aa)
Putative exported solute binding protein id=2930709 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative exported solute binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7740_curated_5
unknown

Not on your lists

4333..5268
DNA (936bp) protein (312aa)
NAD(+) diphosphatase {ECO:0000313|EMBL:CPR18961.1}; EC=3.6.1.22 {ECO:0000313|EMBL:CPR18961.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
NAD(+) diphosphatase (EC:3.6.1.22); K03426 NAD+ diphosphatase [EC:3.6.1.22]
NAD(+) diphosphatase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7G6_RHOVT
SCNpilot_expt_1000_bf_scaffold_7740_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5365..5766
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5A4_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65814.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_7
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5906..6964
DNA (1059bp) protein (353aa)
Glycosyl transferase group 1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IEF7_METNO
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACL59529.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_8
bacterium YEK0313, Bacteria

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7111..7767
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBT9_METS4
Uncharacterized protein {ECO:0000313|EMBL:CEJ15128.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7740_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7764..8324)
DNA (561bp) protein (187aa)
Cytochrome B561 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAZ0_STAND
cytochrome B561; K12262 cytochrome b561
Cytochrome B561 {ECO:0000313|EMBL:ADH91007.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_10
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8343..9035)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036427F6
Bifunctional deaminase-reductase domain-containing protein
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:CCB65818.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9113..9631)
DNA (519bp) protein (173aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLL6_9PROT
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:EKE75307.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_7740_curated_12
unknown

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9897..9989
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7740_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11333)
DNA (657bp) protein (219aa)
Putative hydrolase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JF22_HYPSM
hydrolase
Putative hydrolase {ECO:0000313|EMBL:CCB64190.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_14
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11413..12246)
DNA (834bp) protein (278aa)
Oxidoreductase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RQ0_SYMTH
oxidoreductase rbh
Oxidoreductase {ECO:0000313|EMBL:BAD39643.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12537..14024
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7L9_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7740_curated_16
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14021..14602)
DNA (582bp) protein (194aa)
UPF0114 protein BN117_2129 n=5 Tax=Bordetella RepID=K0MDL4_BORPB
hypothetical protein
UPF0114 protein BN113_2897 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_7740_curated_17
unknown

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comp(14694..14822)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7740_curated_18
unknown

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14987..15205
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 18 items

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