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SCNpilot_expt_1000_bf_scaffold_7007_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7007_curated_1
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(66..401)
DNA (336bp) protein (112aa)
pam; peptidylglycine alpha-amidating monooxygenase; K00504 peptidylglycine monooxygenase [EC:1.14.17.3]
Peptidylglycine alpha-amidating monooxygenase, putative {ECO:0000313|EMBL:ABG31999.1}; EC=1.14.17.3 {ECO:0000313|EMBL:ABG31999.1};; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter; sp. (strain OCh 114)) (Roseobacter denitrificans).;"
Peptidylglycine alpha-amidating monooxygenase, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166U4_ROSDO
SCNpilot_expt_1000_bf_scaffold_7007_curated_2
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(398..898)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZHV5_ROSLO
Peptidase {ECO:0000313|EMBL:KJC54108.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_3
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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999..2447
DNA (1449bp) protein (483aa)
hyuA; dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2]
Dihydropyrimidinase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZYW8_9PROT
Dihydropyrimidinase {ECO:0000313|EMBL:EHM01686.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2578..3612
DNA (1035bp) protein (345aa)
Putative spermidine/putrescine ABC transporter (Substrate binding protein) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z3F0_BRASO
spermidine/putrescine ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
PotD protein {ECO:0000313|EMBL:BAQ50094.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3609..4733
DNA (1125bp) protein (375aa)
Spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I378_AZOC5
spermidine/putrescine ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
Spermidine/putrescine ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAF87989.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_6
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5101..5592
DNA (492bp) protein (164aa)
Putative spermidine/putrescine ABC transporter (Permease protein) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z3E8_BRASO
ABC transporter permease {ECO:0000313|EMBL:KJR61734.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
spermidine/putrescine ABC transporter permease; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_7
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5589..6386
DNA (798bp) protein (266aa)
ABC transporter permease protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8X0_9RHOB
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
ABC transporter, permease protein, putative {ECO:0000313|EMBL:ABG31977.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter; sp. (strain OCh 114)) (Roseobacter denitrificans).;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6759..7457)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN04_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA06337.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_9
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7846..9177)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHU7_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP41989.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_10
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9423..10430
DNA (1008bp) protein (336aa)
Putative ABC transporter substrate binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HYJ7_BORPD
ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:CAP43841.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10521..11315
DNA (795bp) protein (265aa)
sulfate-transporting ATPase (EC:3.6.3.25); K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter, ATP-binding protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4GAA5_HERAR
ABC transporter {ECO:0000313|EMBL:KKB09143.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11308..12186
DNA (879bp) protein (293aa)
ABC transporter permease protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HYH8_BORPD
ABC transporter permease {ECO:0000313|EMBL:KKB09144.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_13
unknown

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comp(12250..12585)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7007_curated_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12890..13645
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JDH8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13125.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_15
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13933..14310
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C4877
Uncharacterized protein {ECO:0000313|EMBL:CCD90815.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
SCNpilot_expt_1000_bf_scaffold_7007_curated_16
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14313..14570
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036A2D51
Membrane protein {ECO:0000313|EMBL:AKH38660.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_17
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14571..14834
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0S9D6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD90813.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_7007_curated_18
unknown

Not on your lists

comp(14756..15166)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7007_curated_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16117..18855
DNA (2739bp) protein (913aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
diguanylate cyclase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036922C1
putative sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains
Displaying 19 items

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