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SCNpilot_expt_1000_bf_scaffold_6567_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6567_curated_1
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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85..819
DNA (735bp) protein (245aa)
UPI0003CF0042 related cluster n=1 Tax=unknown RepID=UPI0003CF0042
Membrane protein {ECO:0000313|EMBL:ESZ41609.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6567_curated_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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843..1499
DNA (657bp) protein (219aa)
UPI0003CFE27A related cluster n=1 Tax=unknown RepID=UPI0003CFE27A
Uncharacterized protein {ECO:0000313|EMBL:ESZ23408.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6567_curated_3
unknown

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2026..2316
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_4
unknown

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2469..2825
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_5
unknown

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4138..4329
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_6
unknown

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4332..4670
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_7
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4619..5077
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003635D62
Energy transducer TonB {ECO:0000313|EMBL:KJR63923.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
tonB; Ferric siderophore transporter; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_6567_curated_8
unknown

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5040..5135
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5222..5593)
DNA (372bp) protein (124aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
UPI0003CE16C0 related cluster n=1 Tax=unknown RepID=UPI0003CE16C0
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SCNpilot_expt_1000_bf_scaffold_6567_curated_10
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5590..6225)
DNA (636bp) protein (212aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7SNC1_PSEME
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ABP83572.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
SCNpilot_expt_1000_bf_scaffold_6567_curated_11
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6305..6487)
DNA (183bp) protein (61aa)
FAD dependent oxidoreductase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q139Z4_RHOPS
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:KCZ85680.1}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
SCNpilot_expt_1000_bf_scaffold_6567_curated_12
unknown

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comp(6638..6895)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_13
unknown

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comp(6969..7238)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6567_curated_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7502..8194
DNA (693bp) protein (231aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBJ3_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:AHB47847.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
winged helix family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6567_curated_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8612..9010
DNA (399bp) protein (133aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Histidine kinase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAQ9_9RHIZ
Integral membrane sensor signal transduction histidine kinase
Displaying 15 items

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