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SCNpilot_expt_1000_bf_scaffold_7565_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7565_curated_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_2
unknown

Not on your lists

comp(74..232)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_3
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243..1010)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DF1C30
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
flagellar basal body L-ring protein
SCNpilot_expt_1000_bf_scaffold_7565_curated_4
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1040..1675)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000375F4FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDX32639.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_7565_curated_5

Not on your lists

comp(1698..2810)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035FF3B2
Uncharacterized protein {ECO:0000313|EMBL:KKN87219.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI
SCNpilot_expt_1000_bf_scaffold_7565_curated_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2815..3279)
DNA (465bp) protein (155aa)
FlgA protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89F29_BRADU
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
SCNpilot_expt_1000_bf_scaffold_7565_curated_7
unknown

Not on your lists

comp(3330..4118)
DNA (789bp) protein (263aa)
flagellar basal-body rod protein FlgG n=1 Tax=Pannonibacter phragmitetus RepID=UPI000379A6E5
Flagellar component of cell-distal portion of basal-body rod {ECO:0000313|EMBL:CPR22188.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
SCNpilot_expt_1000_bf_scaffold_7565_curated_8
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4137..4397)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000317C1F0
fliE; flagellar hook-basal body protein FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_expt_1000_bf_scaffold_7565_curated_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4455..4874)
DNA (420bp) protein (140aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HD9_RHILO
flgC; flagellar basal body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_7565_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..5258)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036981F7
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
flgB; flagellar basal body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
SCNpilot_expt_1000_bf_scaffold_7565_curated_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5280..5753)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000381252A
Uncharacterized protein {ECO:0000313|EMBL:CDX28345.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7565_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5754..6524)
DNA (771bp) protein (257aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAH5_9RHIZ
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:AHB47761.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
flhB; flagellar biosynthesis protein FlhB; K02401 flagellar biosynthetic protein FlhB
SCNpilot_expt_1000_bf_scaffold_7565_curated_13
unknown

Not on your lists

comp(6925..7308)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003748688
Uncharacterized protein {ECO:0000313|EMBL:CPR22182.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
fliN; hypothetical protein; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_expt_1000_bf_scaffold_7565_curated_14
unknown

Not on your lists

comp(7333..8223)
DNA (891bp) protein (297aa)
Chemotaxis protein MotA (Motility protein A) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JC89_HYPSM
Motility protein A {ECO:0000313|EMBL:CPR22181.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
motA; chemotaxis protein MotA; K02556 chemotaxis protein MotA
SCNpilot_expt_1000_bf_scaffold_7565_curated_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8404..9180
DNA (777bp) protein (259aa)
Flagellar basal-body rod protein flgf n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4M0_POLGS
flagellar basal-body rod protein flgf
Flagellar basal-body rod protein flgf {ECO:0000313|EMBL:ADZ72272.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_7565_curated_16
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9530..9916
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BAC65
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:EAS51723.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
flagellar basal body rod protein; K02391 flagellar basal-body rod protein FlgF
SCNpilot_expt_1000_bf_scaffold_7565_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9988..11433
DNA (1446bp) protein (482aa)
ATP synthase {ECO:0000313|EMBL:AHB47756.1}; EC=3.6.3.14 {ECO:0000313|EMBL:AHB47756.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
fliI; flagellum-specific ATP synthase; K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
ATP synthase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAH0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7565_curated_18
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11620..12363)
DNA (744bp) protein (248aa)
GntR family transcriptional regulator n=2 Tax=Pandoraea RepID=V5UJN5_9BURK
HTH-type transcriptional regulator FrlR {ECO:0000313|EMBL:EXI74734.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7565_curated_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12879..14312
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D6F8DF
Uncharacterized protein {ECO:0000313|EMBL:EIG59366.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7565_curated_20
unknown

Not on your lists

comp(14225..14446)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_21
unknown

Not on your lists

comp(14465..14575)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_22
unknown

Not on your lists

comp(14586..15026)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_23
unknown

Not on your lists

comp(15785..16000)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7565_curated_24
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16756..16962
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00035F1ED9
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
Displaying 24 items

View Taxonomy