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SCNpilot_expt_1000_bf_scaffold_6008_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6008_curated_1
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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677..1405
DNA (729bp) protein (243aa)
UPI0003CFA557 related cluster n=1 Tax=unknown RepID=UPI0003CFA557
Uncharacterized protein {ECO:0000313|EMBL:ESZ77685.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_2
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1492..2046)
DNA (555bp) protein (185aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWM5_9PROT
Alanine dehydrogenase {ECO:0000313|EMBL:AKH21843.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1986..2606)
DNA (621bp) protein (207aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Alanine dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTE3_PARL1
SCNpilot_expt_1000_bf_scaffold_6008_curated_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3041..3211
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000361B68A
transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AEQ52051.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3394..5346
DNA (1953bp) protein (651aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSS9_HYPDA
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ADJ22414.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5960..7081
DNA (1122bp) protein (374aa)
Protease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGL3_9RHIZ
Protease {ECO:0000313|EMBL:AHB49094.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
peptidase M50
SCNpilot_expt_1000_bf_scaffold_6008_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7053..7847
DNA (795bp) protein (265aa)
HhH-GPD family protein; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Iron-sulfur cluster assembly protein HesB n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAD9_9RHIZ
Iron-sulfur cluster assembly protein HesB {ECO:0000313|EMBL:AHB47726.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9383..10246
DNA (864bp) protein (288aa)
D-amino acid aminotransferase {ECO:0000313|EMBL:AHB48810.1}; EC=2.6.1.21 {ECO:0000313|EMBL:AHB48810.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372562B
SCNpilot_expt_1000_bf_scaffold_6008_curated_9
bacterium YEK0313, Bacteria

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10384..11550
DNA (1167bp) protein (389aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
amidohydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FD0B01
Putative hydrolase YxeP {ECO:0000313|EMBL:CEJ10730.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_6008_curated_10
unknown

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12153..12737
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCG5_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:CPR21317.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
Displaying 10 items

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