ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6006_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6006_curated_1
RLO_PLX_64_10, Bacteria

Not on your lists

comp(70..831)
DNA (762bp) protein (254aa)
2-dehydro-3-deoxyglucarate aldolase; K12660 2-dehydro-3-deoxy-L-rhamnonate aldolase [EC:4.1.2.-]
2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VQ11_PAETH
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_expt_1000_bf_scaffold_6006_curated_2
unknown

Not on your lists


comp(864..2927)
DNA (2064bp) protein (688aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:CPR15791.1}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:CPR15791.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368439E
SCNpilot_expt_1000_bf_scaffold_6006_curated_3
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3789..4682)
DNA (894bp) protein (298aa)
MFS transporter n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YP96_9RHIZ
MFS transporter {ECO:0000313|EMBL:ERI13887.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_curated_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4815..6050
DNA (1236bp) protein (412aa)
redicted acyl-CoA transferases/carnitine dehydratase (EC:2.8.3.16)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003661B94
Uncharacterized protein {ECO:0000313|EMBL:KJC55048.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_expt_1000_bf_scaffold_6006_curated_5
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6054..6539
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S723_9BURK
Dehydratase {ECO:0000313|EMBL:KDP87878.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
dehydratase
SCNpilot_expt_1000_bf_scaffold_6006_curated_6
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6896..7081)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000377C56A
N-acetyltransferase GCN5; K09181 hypothetical protein
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABS66987.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_6006_curated_7
unknown

Not on your lists

7770..9353
DNA (1584bp) protein (528aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9551..11218)
DNA (1668bp) protein (556aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036F4FFA
Uncharacterized protein {ECO:0000313|EMBL:AHB48325.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
aminoglycoside phosphotransferase; K07028
SCNpilot_expt_1000_bf_scaffold_6006_curated_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11324..12184
DNA (861bp) protein (287aa)
MaoC-like dehydratase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZ06_9PROT
MaoC-like dehydratase {ECO:0000313|EMBL:EDP62567.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
acyl dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_6006_curated_10
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12257..12733)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4ZJ77_THASP
hypothetical protein
Bacterial sensory transduction regulator family protein {ECO:0000313|EMBL:KIN89793.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
SCNpilot_expt_1000_bf_scaffold_6006_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13174..13788
DNA (615bp) protein (205aa)
FAD dependent oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIS7_9PROT
Cyclohexanone monooxygenase {ECO:0000313|EMBL:ETR78797.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_6006_curated_12
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14324..14812
DNA (489bp) protein (163aa)
Cyclohexanone monooxygenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D437_BRAJP
Cyclohexanone monooxygenase {ECO:0000313|EMBL:EJZ32800.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
cyclohexanone monooxygenase
SCNpilot_expt_1000_bf_scaffold_6006_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14860..15459)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLC9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50348.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6006_curated_14
unknown

Not on your lists

comp(15610..16011)
DNA (402bp) protein (134aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPI0_HYPDA
Alpha-2-macroglobulin domain protein {ECO:0000313|EMBL:CPR17633.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alpha-2-macroglobulin
SCNpilot_expt_1000_bf_scaffold_6006_curated_15
unknown

Not on your lists

16297..18336
DNA (2040bp) protein (680aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_16
unknown

Not on your lists

19150..19533
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_17
unknown

Not on your lists

19517..19681
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_18
unknown

Not on your lists

20058..20885
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_19
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21443..22711
DNA (1269bp) protein (423aa)
Putative uncharacterized protein n=1 Tax=Shewanella sp. HN-41 RepID=F7RLP0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGM70788.1}; TaxID=327275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_curated_20
unknown

Not on your lists

22948..23703
DNA (756bp) protein (252aa)
Glutathione S-transferase domain-containing protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0GEI7_9BURK
Glutathione S-transferase-like protein {ECO:0000313|EMBL:CPR16585.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_6006_curated_21
unknown

Not on your lists


23781..25364
DNA (1584bp) protein (528aa)
Ffh, signal recognition particle protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAI9_9RHIZ
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
SCNpilot_expt_1000_bf_scaffold_6006_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25368..25874
DNA (507bp) protein (169aa)
Acetyltransferase, GNAT family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LNF8_RUEPO
HAE1 family hydrophobic/amphiphilic exporter-1 (Mainly G-bacteria) {ECO:0000313|EMBL:KFC73974.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_6006_curated_23
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25927..26298
DNA (372bp) protein (124aa)
30S ribosomal protein S16 n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA03_9RHIZ
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
rpsP; 30S ribosomal protein S16
SCNpilot_expt_1000_bf_scaffold_6006_curated_24
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26317..26868
DNA (552bp) protein (184aa)
Ribosome maturation factor RimM n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JE04_HYPSM
rimM; ribosome maturation factor rimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6006_curated_25
unknown

Not on your lists

27053..27637
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003707286
Uncharacterized protein {ECO:0000313|EMBL:CPR21475.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_curated_26
unknown

Not on your lists

27680..29521
DNA (1842bp) protein (614aa)
ABC transporter n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BER3_9RHIZ
Holdfast attachment protein C {ECO:0000313|EMBL:CPR18395.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_6006_curated_27
unknown

Not on your lists

comp(30336..30449)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_curated_28
unknown

Not on your lists

31042..31185
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 28 items

View Taxonomy