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SCNpilot_expt_1000_bf_scaffold_9311_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9311_curated_1
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1017)
DNA (1017bp) protein (339aa)
Glycosyl transferase family 2 n=2 Tax=Ketogulonicigenium vulgare RepID=E3F3F3_KETVY
Glycosyl transferase group 1
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADO41959.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_9311_curated_2
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1135..2130)
DNA (996bp) protein (332aa)
lmbP; galactokinase; K07031 D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
GHMP kinase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F3F2_KETVY
Galactokinase/homoserine kinase family protein {ECO:0000313|EMBL:AEM40180.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_9311_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2120..3322)
DNA (1203bp) protein (401aa)
Histidinol-phosphate phosphatase family protein (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLM6_AFIFE
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000313|EMBL:EKS31222.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_9311_curated_4
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3349..3738)
DNA (390bp) protein (130aa)
gmhA; Phosphoheptose isomerase 2 (EC:5.-.-.-); K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
Phosphoheptose isomerase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F3E9_KETVY
SCNpilot_expt_1000_bf_scaffold_9311_curated_5
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4336..5388)
DNA (1053bp) protein (351aa)
Glycosyl transferase group 1 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IFN1_BEII9
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACB94242.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_9311_curated_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5986..6903)
DNA (918bp) protein (306aa)
Protein FdhE homolog n=1 Tax=Rhodovulum sp. PH10 RepID=J5PCG0_9RHOB
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_expt_1000_bf_scaffold_9311_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6937..7632)
DNA (696bp) protein (232aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1C8_POLGS
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:ADZ69710.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_9311_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7629..8567)
DNA (939bp) protein (313aa)
Formate dehydrogenase, beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X6_9BRAD
Formate dehydrogenase-O subunit beta {ECO:0000313|EMBL:CEG07216.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
fdoH; formate dehydrogenase-O iron-sulfur subunit FdoH; K00124 formate dehydrogenase, beta subunit
Displaying 8 items

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