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SCNpilot_expt_1000_bf_scaffold_3376_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3376_curated_1
unknown

Not on your lists

comp(7..354)
DNA (348bp) protein (116aa)
fdhF; formate dehydrogenase alpha subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase alpha subunit n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CVN2_AGRT5
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:CPR20806.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3376_curated_2
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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614..1078
DNA (465bp) protein (155aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_3376_curated_3
unknown

Not on your lists

1560..1688
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_4
unknown

Not on your lists

2121..2345
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_5
unknown

Not on your lists

2601..2831
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2862..4322)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E9EC0
Formate dehydrogenase subunit beta {ECO:0000313|EMBL:AHB49083.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NAD-dependent formate dehydrogenase beta subunit
SCNpilot_expt_1000_bf_scaffold_3376_curated_7
unknown

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4542..4943
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5051..5965)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B744_9RHIZ
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGK58853.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_3376_curated_9
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6062..9664)
DNA (3603bp) protein (1201aa)
5-oxoprolinase {ECO:0000313|EMBL:BAQ67676.1}; EC=3.5.2.9 {ECO:0000313|EMBL:BAQ67676.1};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
5-oxoprolinase; K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
5-oxoprolinase n=1 Tax=Loktanella hongkongensis RepID=UPI0003686768
SCNpilot_expt_1000_bf_scaffold_3376_curated_10
unknown

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10018..10128
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_11
unknown

Not on your lists

10135..10401
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_12
unknown

Not on your lists

10876..11100
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3376_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11102..11809)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUZ4_PUSST
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3376_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11865..12920)
DNA (1056bp) protein (352aa)
Putative transport protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5T9_9RHOB
dctP3; TRAP transporter subunit DctP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3376_curated_15
Candidatus Pelagibacter ubique, Candidatus Pelagibacter, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12968..13780)
DNA (813bp) protein (271aa)
UPI0003C7E8D9 related cluster n=1 Tax=unknown RepID=UPI0003C7E8D9
hypothetical protein
UPF0317 protein SAR11_0660 {ECO:0000255|HAMAP-Rule:MF_01830}; TaxID=335992 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Pelagibacter ubique (strain HTCC1062).;"
SCNpilot_expt_1000_bf_scaffold_3376_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14060..14674
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEW6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38125.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amidohydrolase 2
Displaying 16 items

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