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SCNpilot_expt_1000_bf_scaffold_13812_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13812_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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598..1953
DNA (1356bp) protein (452aa)
Phage integrase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHI7_9RHIZ
Phage integrase
Phage integrase {ECO:0000313|EMBL:AGK59906.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_13812_curated_2
unknown

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comp(2211..2438)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13812_curated_3
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2447..4099)
DNA (1653bp) protein (551aa)
Arabinose efflux permease family protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y908_9BRAD
Arabinose efflux permease family protein {ECO:0000313|EMBL:EHR00988.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
conserved membrane hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13812_curated_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4105..4623)
DNA (519bp) protein (173aa)
Thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=7 Tax=Pseudomonas aeruginosa RepID=K1DIK0_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ERV69601.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
SCNpilot_expt_1000_bf_scaffold_13812_curated_5

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comp(4628..4948)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630C8F
Uncharacterized protein {ECO:0000313|EMBL:AGC71245.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13812_curated_6

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comp(4967..5227)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630481
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AGC71246.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_13812_curated_7
unknown

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comp(5780..6253)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003630481
SCNpilot_expt_1000_bf_scaffold_13812_curated_8

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comp(6250..7248)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CCDD0
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AGC71247.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_expt_1000_bf_scaffold_13812_curated_9

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comp(7245..7943)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380D457
Conjugative transfer protein TrbF {ECO:0000313|EMBL:AGC71248.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_expt_1000_bf_scaffold_13812_curated_10

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comp(7959..9248)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037507D5
Conjugative transfer protein TrbL {ECO:0000313|EMBL:AGC71249.1}; TaxID=1256589 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_75.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_1000_bf_scaffold_13812_curated_11
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9541..11004)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium 229E RepID=U4VFL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERM01652.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_13812_curated_12
unknown

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11395..11727
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13812_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11697..12242
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXD1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94497.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Displaying 13 items

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