ggKbase home page

SCNpilot_expt_1000_bf_scaffold_10618_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10618_curated_1
unknown

Not on your lists

1..204
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035D5A6C
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807, ECO:0000313|EMBL:CPR16366.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
xerD; Tyrosine recombinase xerD; K04763 integrase/recombinase XerD
SCNpilot_expt_1000_bf_scaffold_10618_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(683..1588)
DNA (906bp) protein (302aa)
Alpha/beta hydrolase fold containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD54_9RHIZ
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EHS49267.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_10618_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1835..2611
DNA (777bp) protein (259aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
surE; stationary phase survival protein SurE (EC:3.1.3.5); K03787 5'-nucleotidase [EC:3.1.3.5]
Stationary phase survival protein SurE n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCH0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_10618_curated_4
unknown

Not on your lists

comp(2684..2872)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10618_curated_5
unknown

Not on your lists

comp(3228..3560)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10618_curated_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3932..4282)
DNA (351bp) protein (117aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
thiL; thiamin-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ03_9PROT
SCNpilot_expt_1000_bf_scaffold_10618_curated_7
unknown

Not on your lists

4669..4989
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10618_curated_8
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5193..6221
DNA (1029bp) protein (343aa)
fadH; 2,4-dienoyl-CoA reductase (EC:1.3.1.34); K00219 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
2,4-dienoyl-CoA reductase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NZS4_AROAE
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_10618_curated_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6166..7257
DNA (1092bp) protein (364aa)
2,4-dienoyl-CoA reductase (EC:1.3.1.34); K00219 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
2,4-dienoyl-CoA reductase {ECO:0000313|EMBL:ABE47133.1}; EC=1.3.1.34 {ECO:0000313|EMBL:ABE47133.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
2,4-dienoyl-CoA reductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120A9_POLSJ
SCNpilot_expt_1000_bf_scaffold_10618_curated_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7278..8039
DNA (762bp) protein (254aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFH09967.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EFH09967.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oxidoreductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRV3_9PROT
SCNpilot_expt_1000_bf_scaffold_10618_curated_11
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8047..8604)
DNA (558bp) protein (186aa)
damage inducible protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4C7BC
hypothetical protein
Protein dinB {ECO:0000313|EMBL:CDM59104.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_expt_1000_bf_scaffold_10618_curated_12
unknown

Not on your lists

comp(9053..9145)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10618_curated_13
unknown

Not on your lists

9884..10018
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 13 items

View Taxonomy