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SCNpilot_expt_1000_bf_scaffold_7452_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7452_curated_1
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..237
DNA (237bp) protein (79aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
sodC; superoxide dismutase (Cu/Zn); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM15_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7452_curated_2
unknown

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comp(328..567)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7452_curated_3
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(619..1521)
DNA (903bp) protein (301aa)
Integral membrane protein DUF6 n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGW2_9RHOB
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_50_11_curated
SCNpilot_expt_1000_bf_scaffold_7452_curated_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1676..3019)
DNA (1344bp) protein (448aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J9R9_9PROT
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:ETR76099.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_7452_curated_5
unknown

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3157..3432
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7452_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3491..3967)
DNA (477bp) protein (159aa)
Cro/Cl family transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036856CB
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:AHB48284.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7452_curated_7
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4263..5084
DNA (822bp) protein (274aa)
carboxyl transferase domain-containing protein; K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
Propionyl-CoA carboxylase n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UJS9_9RHOB
Propionyl-CoA carboxylase {ECO:0000313|EMBL:EAP88918.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
SCNpilot_expt_1000_bf_scaffold_7452_curated_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5122..5838
DNA (717bp) protein (239aa)
carboxyl transferase (EC:6.4.1.3); K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
Carboxyl transferase {ECO:0000313|EMBL:ACL55334.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ACL55334.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036FD733
SCNpilot_expt_1000_bf_scaffold_7452_curated_9
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5851..6237)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5K0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64312.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_7452_curated_10
Virgibacillus sp. SK37, Virgibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6459..7736)
DNA (1278bp) protein (426aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=403957 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Virgibacillus.;" source="Virgibacillus sp. SK37.;"
histidinol dehydrogenase (EC:1.1.1.23); K15509 sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DD9F7C
SCNpilot_expt_1000_bf_scaffold_7452_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7893..8894)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003789F52
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24303.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_7452_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9146..9508)
DNA (363bp) protein (121aa)
Polyphenol oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGU6_9RHIZ
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
multi-copper oxidoreductase; K05810 conserved hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7452_curated_13
unknown

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10369..10584
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7452_curated_14
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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11231..12085
DNA (855bp) protein (285aa)
Ion transporter n=1 Tax=Thauera sp. 27 RepID=N6YMU1_9RHOO
Ion transporter {ECO:0000313|EMBL:ENO81324.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
Ion transport protein; K08714 voltage-gated sodium channel
SCNpilot_expt_1000_bf_scaffold_7452_curated_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12165..12722
DNA (558bp) protein (186aa)
amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DCB326
Amidohydrolase {ECO:0000313|EMBL:KJB94050.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_7452_curated_16
unknown

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13201..13305
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7452_curated_17
bacterium YEK0313, Bacteria

Not on your lists

13345..14280
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U8S2_METS4
3-keto-5-aminohexanoate cleavage enzyme {ECO:0000313|EMBL:CEJ12457.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7452_curated_18
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14702..15727
DNA (1026bp) protein (342aa)
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CCB64673.1}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CCB64673.1};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Adenylosuccinate lyase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J6U7_HYPSM
SCNpilot_expt_1000_bf_scaffold_7452_curated_19
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15740..16801
DNA (1062bp) protein (354aa)
UPI0003D1C1D1 related cluster n=1 Tax=unknown RepID=UPI0003D1C1D1
Contig24, whole genome shotgun sequence {ECO:0000313|EMBL:ETA53249.2}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_7452_curated_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16971..17294
DNA (324bp) protein (108aa)
membrane protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039D70AF
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:ACA16942.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_7452_curated_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17347..18033
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BAD8A
protein-export membrane protein; K03072 preprotein translocase subunit SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 21 items

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