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SCNpilot_expt_1000_bf_scaffold_6075_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6075_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..827)
DNA (825bp) protein (275aa)
Putative peptide ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XFD7_VARPD
putative peptide ABC transporter, ATP-binding protein
Putative peptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU51044.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_6075_curated_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(824..1447)
DNA (624bp) protein (208aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BXM1_DELAS
ABC transporter permease; K02034 peptide/nickel transport system permease protein
Peptide/nickel transport system permease {ECO:0000313|EMBL:EPD37575.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_expt_1000_bf_scaffold_6075_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1694..2665)
DNA (972bp) protein (324aa)
Binding-protein-dependent transport systems inner membrane component n=4 Tax=Delftia RepID=A9BXM2_DELAS
ABC transporter permease; K02033 peptide/nickel transport system permease protein
Peptide/nickel transport system permease {ECO:0000313|EMBL:EPD37576.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_expt_1000_bf_scaffold_6075_curated_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2696..4174)
DNA (1479bp) protein (493aa)
Bacterial extracellular solute-binding protein, family 5 middle family protein 15 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HUT6_ACHXA
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGY25241.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
extracellular solute-binding protein, family 5 middle family protein 15; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6075_curated_5
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4492..5022
DNA (531bp) protein (177aa)
Transcriptional regulator n=2 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W208_RHISN
Uncharacterized protein {ECO:0000313|EMBL:GAJ37546.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6075_curated_6
unknown

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comp(5176..5697)
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6075_curated_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5813..6670
DNA (858bp) protein (286aa)
Periplasmic amidohydrolase family protein n=1 Tax=Shewanella oneidensis (strain MR-1) RepID=Q8E841_SHEON
Uncharacterized protein {ECO:0000313|EMBL:ETW98411.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein; K07047
SCNpilot_expt_1000_bf_scaffold_6075_curated_8
unknown

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comp(6508..7020)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6075_curated_9
unknown

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7336..7674
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6075_curated_10
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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7881..10166
DNA (2286bp) protein (762aa)
oxidoreductase (EC:1.5.99.1)
FAD dependent oxidoreductase/aminomethyl transferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZT1_9PROT
FAD dependent oxidoreductase/aminomethyl transferase {ECO:0000313|EMBL:EDP62256.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_6075_curated_11
unknown

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10278..10445
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6075_curated_12
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10615..11028
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003797316
Wenxma_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70144.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
TPP-requiring enzyme co-localized with fatty acid metabolic genes
Displaying 12 items

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