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SCNpilot_expt_1000_bf_scaffold_2055_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2055_curated_1
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..414)
DNA (414bp) protein (138aa)
dihydroneopterin aldolase family protein; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase family protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LKZ5_9PROT
Dihydroneopterin aldolase family protein {ECO:0000313|EMBL:EKF09705.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(493..723)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AMT8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL33644.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
3-oxoacyl-ACP reductase
SCNpilot_expt_1000_bf_scaffold_2055_curated_3
unknown

Not on your lists

1174..1401
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2055_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..2426
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037DC8B6
Uncharacterized protein {ECO:0000313|EMBL:AHB48149.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2055_curated_5
unknown

Not on your lists

comp(2535..3452)
DNA (918bp) protein (306aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2055_curated_6
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3747..5045
DNA (1299bp) protein (433aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium
hmgA; homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CBA3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2055_curated_7
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5075..6028
DNA (954bp) protein (318aa)
Metallo-beta-lactamase-like protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NPE0_9RHIZ
Metallo-beta-lactamase-like protein {ECO:0000313|EMBL:EKF41235.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
metallo-beta-lactamase family protein
SCNpilot_expt_1000_bf_scaffold_2055_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6200..7807
DNA (1608bp) protein (536aa)
FAD-dependent oxidoreductase; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
FAD-dependent oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2PJA7_9RHIZ
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EKF41237.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_9
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7804..8028
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGR6_9RHIZ
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_expt_1000_bf_scaffold_2055_curated_10
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8048..8845
DNA (798bp) protein (266aa)
putative oxidoreductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Putative oxidoreductase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZB7_ACIMA
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ETR76611.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9032..9538)
DNA (507bp) protein (169aa)
Resolvase domain n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L165_METC4
Resolvase domain
Resolvase domain {ECO:0000313|EMBL:ACK84987.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_12
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9674..10861
DNA (1188bp) protein (396aa)
Uncharacterized protein {ECO:0000313|EMBL:KHJ54602.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_13
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10805..11113)
DNA (309bp) protein (103aa)
Plasmid maintenance system antidote protein, XRE family n=2 Tax=Rhizobiales RepID=A7IBZ1_XANP2
XRE family plasmid maintenance system antidote protein
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:ABS65534.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11122..11418)
DNA (297bp) protein (99aa)
Plasmid maintenance system killer n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ARV7_RHILS
plasmid maintenance system killer protein; K07334 proteic killer suppression protein
Plasmid maintenance system killer {ECO:0000313|EMBL:ACS55132.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_15
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11681..12661)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XXQ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMS39717.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
SCNpilot_expt_1000_bf_scaffold_2055_curated_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13021..13632)
DNA (612bp) protein (204aa)
LpxA family transferase n=1 Tax=Pseudomonas sp. PAMC 26793 RepID=UPI00030B1AB7
Uncharacterized protein {ECO:0000313|EMBL:ESW58330.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
LpxA family transferase
SCNpilot_expt_1000_bf_scaffold_2055_curated_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13670..14215)
DNA (546bp) protein (182aa)
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46453.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_18
unknown

Not on your lists

comp(14302..14535)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2055_curated_19
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14651..15481
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W7C1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN14637.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
poly(aspartic acid) hydrolase
SCNpilot_expt_1000_bf_scaffold_2055_curated_20
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15516..15968
DNA (453bp) protein (151aa)
NUDIX hydrolase n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PVI6_PSEUV
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEV39774.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15991..16554
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTQ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM27349.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2055_curated_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16649..17338)
DNA (690bp) protein (230aa)
Glutathione S-transferase {ECO:0000313|EMBL:EGP08875.1}; EC=2.5.1.18 {ECO:0000313|EMBL:EGP08875.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Glutathione S-transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIR2_9BRAD
glutathione S-transferase family protein
SCNpilot_expt_1000_bf_scaffold_2055_curated_23
unknown

Not on your lists

comp(17365..17916)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2055_curated_24
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18072..18335)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMP3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65841.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_2055_curated_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..18955)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GAB2_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT76828.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_26
unknown

Not on your lists

comp(19149..20135)
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2055_curated_27
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20795..21313
DNA (519bp) protein (173aa)
Type IV secretory pathway VirD2 component n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YXV2_SPHJU
virD2; type IV secretory pathway VirD2 component
Type IV secretory pathway VirD2 component {ECO:0000313|EMBL:BAI95184.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21286..22593
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036FFBDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05228.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_2055_curated_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22590..22814
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210U4_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:GAO56852.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2055_curated_30
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23536..24852)
DNA (1317bp) protein (439aa)
major facilitator transporter n=1 Tax=Xanthobacteraceae RepID=UPI00036906FB
Major facilitator transporter {ECO:0000313|EMBL:EXL02817.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Permease,MFS
Displaying items 1-30 of 32 in total

View Taxonomy