ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4966_curated_3

Organism: scnpilot_dereplicated_Alphaproteobacteria_8

near complete RP 41 / 55 BSCG 41 / 51 MC: 2 ASCG 7 / 38
Location: 2205..4205

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000360350F similarity UNIREF
DB: UNIREF100
  • Identity: 82.9
  • Coverage: 665.0
  • Bit_score: 1055
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.8
  • Coverage: 665.0
  • Bit_score: 1040
  • Evalue 0.0
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 666.0
  • Bit_score: 1027
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hyphomicrobium nitrativorans → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2001
ATGGCGACGAAATCCGAGGAGAAGGCCGCCCCCGCAGCCGAGACCGCCGAGAAGGACAGCCCGCTGCTCGATCTCTCGGATCAGTCGGTCAAGAAGCTGCTCAAGGTCGGCAAGCAGCGCGGCTACGTCACCTATGACGAGCTGAATTCCGTGCTGCCCTCCGAGGAGGTCTCCTCCGAGCAGATCGAAGACACGATGGCGATGCTCTCCGAGATGGGCATCAACGTCGTCGATTCCGAGGAGAGCGAGGAAGCTGCGGCCGATGACACGCCGGACGCCGCGGACGAGGAAGACGGCCGTGCGATGACCGTGCAGTCGCTGCCCGCGAAGACCGAGGGCCGCGCCGAGCCGGCCGATCGTACGGACGATCCCGTGCGCATGTATCTGCGCGAGATGGGCACCGTCGAGCTGCTGTCACGCGAGGGCGAGATCGCGATCGCCAAGCGCATCGAGGCCGGCCGCGAAGCCATGATCGCGGGCCTCTGCGAGAGCCCGCTGACCTTCCAGGCCATCATCATCTGGCGGGACGAGCTCAACGAGGGCAAGGTCCTGCTGCGCGACATCATCGATCTCGAGGCCACCTACGAAGGTCCCGAGGCGAAAGCTGCGCCGCCGCCCATGCCGAACGGCAACGGCGGCGCCGACGCTGACGATGAGGCCGAGCGCGCCGAGGGGGGCGAAGGCGAGCCGCGCGGCGAAGGCGAGATGGACGAGGACGACGACTACGAGAACGCCGTCTCCCTCGCAGCCATGGAGCACGAGCTGAAGCCGAAGGTGCTCGAGACCTTCGATGCCATCGCGTCGAACTACAAGAAGCTTCGTAAGCAGCAGGACAAGAAGCTCGAGCAGCAGGTCGCGGGCGAAGCCGGCTCACGCCAGCAGCAGAAGGCCTACGAGAAGCTGCGCGAGGAGATCGTCAAGGACGTCAAGAGCCTCTCGCTCAACAACGCCCGTATCGAGAGCCTCGTCGAGCAGCTCTATCGGATCAACAAGAACCTGATCAGCTTCGAGGGCCGCATCATGCGGCTCGCCGACAGCCACGGCGTCGTGCGCACCGCCTTCATCTCCGAGTACTACGGCAACGAGCTCGACCAGACCTGGCTCGACCGTATGGCGAACTCGAAGTCGAAGGCCTGGGATCGCCTGATCAAGGCCGAGCGCAAGCAGATCGAGAAGATCCGCGCCGAGATCCATCAGCTCGCGAGCGAGACGGGTCTCGAGATCGCGGAGTTCCGCCGCATCGTCAAGAGCGTGCAGAAGGGCGAGCGCGAGGCACGCCAGGCGAAGAAGGAGATGGTCGAGGCCAATCTCCGGTTGGTGATCTCGATCGCCAAGAAGTACACGAACCGCGGTCTGCAGTTCCTGGATCTCATCCAGGAAGGCAACATCGGCCTCATGAAGGCCGTCGACAAGTTCGAGTACCGGCGCGGCTACAAGTTCTCGACCTACGCGACGGGGTGGATCCGTCAGGCTATCACGCGCTCGATCGCGGACCAGGCGCGCACGATCCGCATTCCCGTGCACATGATCGAGACGATCAACAAGATCGTGCGCACGAGCCGGCAGATGCTCCACGAGATCGGCCGCGAGCCGACGCCGGAGGAGCTTGCCGAGAAGCTCGCGATGCCGATCGAGAAGGTCCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCAGCCTCGAGACGCCGATCGGCGACGAGGAGGATTCACACCTCGGCGACTTCATCGAGGACAAGAACGCGCTGCTGCCGATCGATGCGGCCATCCAGTCGAACCTGCGCGAGACGACGACGCGCGTGCTCGCCTCGCTCACGCCGCGCGAGGAGCGCGTGCTGCGTATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTCGAAGAGGTCGGCCAGCAGTTCTCGGTCACGCGCGAGCGCATTCGCCAGATCGAGGCCAAGGCCCTGCGCAAGCTCAAGCACCCGAGCCGCAGCCGGAAGCTTCGGAGCTTCCTCGACAACTGA
PROTEIN sequence
Length: 667
MATKSEEKAAPAAETAEKDSPLLDLSDQSVKKLLKVGKQRGYVTYDELNSVLPSEEVSSEQIEDTMAMLSEMGINVVDSEESEEAAADDTPDAADEEDGRAMTVQSLPAKTEGRAEPADRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYEGPEAKAAPPPMPNGNGGADADDEAERAEGGEGEPRGEGEMDEDDDYENAVSLAAMEHELKPKVLETFDAIASNYKKLRKQQDKKLEQQVAGEAGSRQQQKAYEKLREEIVKDVKSLSLNNARIESLVEQLYRINKNLISFEGRIMRLADSHGVVRTAFISEYYGNELDQTWLDRMANSKSKAWDRLIKAERKQIEKIRAEIHQLASETGLEIAEFRRIVKSVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATGWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPIEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNALLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*