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SCNpilot_expt_1000_bf_scaffold_6419_curated_4

Organism: scnpilot_dereplicated_Alphaproteobacteria_8

near complete RP 41 / 55 BSCG 41 / 51 MC: 2 ASCG 7 / 38
Location: comp(2240..2914)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGT3_HYPSM similarity UNIREF
DB: UNIREF100
  • Identity: 58.9
  • Coverage: 190.0
  • Bit_score: 235
  • Evalue 4.00e-59
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.9
  • Coverage: 190.0
  • Bit_score: 235
  • Evalue 1.30e-59
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:CCB65580.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.9
  • Coverage: 190.0
  • Bit_score: 235
  • Evalue 5.70e-59

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Taxonomy

Hyphomicrobium sp. MC1 → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
ATGCGCGCGCTGAGCTACACTCCGATGGTTGGGACGACCGCGGGGAGCCGTTGCGTGACGCGCGCGCACGATAGCGGTCCGGGACCGGGAGACCGGCATGGACCGGGGGCGGGGACGGCAGCCGAGGAGGCGGCCGTTCTCGCACGCATTCGCGATGGCGATGGCACCGCCTTCCGCGAGCTGATCGACCGCCACGTGGGCAGCCTGCTCGCGGTTGCGCGGCGCATGCTCAAGGTCGATGGCGATGCGGAGGACATCGTGCAGGAAGCGCTCGTGCGCGTCTGGCACAATGCCGGCACGCTCGAGCTGGGTCCCGGCGGCCTCAGGCCCTGGCTGCGGCGTGTGGTCACGAACCTCTGCCTCGACCACCTGCGCCGCCATCGACTGACCAGCGTCGTCGCGGACGTACCCGAGACGCCCGAGCCCCCCGAGCAGGGCCGGGGCCTCGAGGAGGCGGATCTTGCGAAGCGCGTCGAGGCGGCGCTCTCCGCGCTCCCCGAGCGCCAGCGTGTGGCGTTGACGCTTTTCCACTACGAGGGCTTGAGCCAGATCGAGGTGGGAGAGGCGCTCGGGATATCGGATGAAGCGGTCGAGTCGCTGCTGGCCCGTGCCCGGCGCTCGCTCAAGGCGGCATTGAAGGACGAGTGGCGGCAACTGCTGCCCGACGGCGAGTAA
PROTEIN sequence
Length: 225
MRALSYTPMVGTTAGSRCVTRAHDSGPGPGDRHGPGAGTAAEEAAVLARIRDGDGTAFRELIDRHVGSLLAVARRMLKVDGDAEDIVQEALVRVWHNAGTLELGPGGLRPWLRRVVTNLCLDHLRRHRLTSVVADVPETPEPPEQGRGLEEADLAKRVEAALSALPERQRVALTLFHYEGLSQIEVGEALGISDEAVESLLARARRSLKAALKDEWRQLLPDGE*