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SCNpilot_cont_1000_p_scaffold_946_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_946_curated_1
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..352
DNA (351bp) protein (117aa)
dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC:2.3.1.168); K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase {ECO:0000313|EMBL:AEG50891.1}; EC=2.3.1.168 {ECO:0000313|EMBL:AEG50891.1};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F379_SPHCR
SCNpilot_cont_1000_p_scaffold_946_curated_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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355..750
DNA (396bp) protein (132aa)
acyl-CoA thioester hydrolase; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
acyl-CoA thioester hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6CE99
Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:KHA64330.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_1000_p_scaffold_946_curated_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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747..1898
DNA (1152bp) protein (384aa)
ivdH; isovaleryl-CoA dehydrogenase protein; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Isovaleryl-CoA dehydrogenase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DJW4_9RHIZ
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EJT02014.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_cont_1000_p_scaffold_946_curated_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1895..3490
DNA (1596bp) protein (532aa)
Methylcrotonoyl-CoA carboxylase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZ34_9SPHN
methylcrotonoyl-CoA carboxylase
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:AGH48980.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_1000_p_scaffold_946_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3493..5346
DNA (1854bp) protein (618aa)
carbamoyl-phosphate synthase subunit L; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
3-methylcrotonyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B62277
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:AIT08008.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_1000_p_scaffold_946_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5346..5792
DNA (447bp) protein (149aa)
MaoC family dehydratase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E0FC5
putative MaoC dehydratase family protein
MaoC family dehydratase {ECO:0000313|EMBL:AHF88345.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_cont_1000_p_scaffold_946_curated_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5789..6634
DNA (846bp) protein (282aa)
HpcH/HpaI aldolase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
HpcH/HpaI aldolase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESB6_METSB
HpcH/HpaI aldolase {ECO:0000313|EMBL:ACK52331.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_1000_p_scaffold_946_curated_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6655..7680)
DNA (1026bp) protein (342aa)
alcohol dehydrogenase GroES; K00060 threonine 3-dehydrogenase [EC:1.1.1.103]
L-threonine 3-dehydrogenase n=1 Tax=alpha proteobacterium L41A RepID=UPI0003661EFC
L-threonine dehydrogenase {ECO:0000313|EMBL:GAO37988.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_1000_p_scaffold_946_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7677..8888)
DNA (1212bp) protein (404aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29]
Glycine C-acetyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRI1_BREDI
SCNpilot_cont_1000_p_scaffold_946_curated_10
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8901..9356)
DNA (456bp) protein (152aa)
MarR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B33CDD
MarR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_1000_p_scaffold_946_curated_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9346..10008)
DNA (663bp) protein (221aa)
Maleylacetoacetate isomerase {ECO:0000313|EMBL:CCP09597.1}; EC=5.2.1.2 {ECO:0000313|EMBL:CCP09597.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
Maleylacetoacetate isomerase (EC:2.5.1.18 5.2.1.2); K01800 maleylacetoacetate isomerase [EC:5.2.1.2]
Maleylacetoacetate isomerase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CJA1_STEMA
SCNpilot_cont_1000_p_scaffold_946_curated_12
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9992..10963)
DNA (972bp) protein (324aa)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2JXU3_9GAMM
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:EKE75124.1}; TaxID=745411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
2-keto-4-pentenoate hydratase
SCNpilot_cont_1000_p_scaffold_946_curated_13
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10960..12078)
DNA (1119bp) protein (373aa)
homogentisate 1,2-dioxygenase; K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5]
Homogentisate 1,2-dioxygenase n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IXC4_PSEUL
Homogentisate 1,2-dioxygenase {ECO:0000313|EMBL:BAK75473.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
SCNpilot_cont_1000_p_scaffold_946_curated_14
Oceanimonas sp. GK1, Oceanimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12078..13145)
DNA (1068bp) protein (356aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Oceanimonas sp. (strain GK1) RepID=H2FU42_OCESG
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AEY02669.1}; TaxID=511062 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas.;" source="Oceanimonas sp. (strain GK1).;"
SCNpilot_cont_1000_p_scaffold_946_curated_15
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13214..14107
DNA (894bp) protein (298aa)
phenylalanine-4-hydroxylase (EC:1.14.16.1); K00500 phenylalanine-4-hydroxylase [EC:1.14.16.1]
Phenylalanine-4-hydroxylase {ECO:0000313|EMBL:AEG50829.1}; EC=1.14.16.1 {ECO:0000313|EMBL:AEG50829.1};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Phenylalanine-4-hydroxylase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F317_SPHCR
SCNpilot_cont_1000_p_scaffold_946_curated_16
unknown

Not on your lists

14325..14540
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_946_curated_17
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15533..15622
DNA (90bp) protein (30aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.9); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036BA2CB
SCNpilot_cont_1000_p_scaffold_946_curated_18
unknown

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15635..17362
DNA (1728bp) protein (576aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_946_curated_19
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17376..19451
DNA (2076bp) protein (692aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum bra
Potassium-transporting ATPase B chain n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUX9_AZOBR
kdpB; potassium translocating ATPase, subunit B
SCNpilot_cont_1000_p_scaffold_946_curated_20
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19462..20037
DNA (576bp) protein (192aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L
kdpC; potassium translocating ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
UPI0003CF41FF related cluster n=1 Tax=unknown RepID=UPI0003CF41FF
SCNpilot_cont_1000_p_scaffold_946_curated_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20052..22748
DNA (2697bp) protein (899aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Osmosensitive K+ channel signal transduction histidine kinase (Two-component system with KdpE) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUY1_AZOBR
kdpD; osmosensitive K+ channel signal transduction histidine kinase (two-component system with KdpE)
SCNpilot_cont_1000_p_scaffold_946_curated_22
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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22745..23473
DNA (729bp) protein (243aa)
Two-component response regulator of potassium translocation n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZCU1_AZOL4
kdpE; two-component response regulator of potassium translocation; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
Two-component response regulator of potassium translocation {ECO:0000313|EMBL:CBS89642.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_1000_p_scaffold_946_curated_23
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24178..24783
DNA (606bp) protein (202aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QPB7_9CAUL
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EGF91175.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCNpilot_cont_1000_p_scaffold_946_curated_24
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24755..25723
DNA (969bp) protein (323aa)
FecR family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QPB8_9CAUL
FecR family protein {ECO:0000313|EMBL:EGF91176.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
putative anti-sigma factor
SCNpilot_cont_1000_p_scaffold_946_curated_25
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25841..29065
DNA (3225bp) protein (1075aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K4G3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31499.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
TonB-dependent receptor-like protein
SCNpilot_cont_1000_p_scaffold_946_curated_26
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29393..32371
DNA (2979bp) protein (993aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K4G3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31499.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
TonB-dependent receptor
Displaying 26 items

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