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SCNpilot_cont_1000_p_scaffold_1976_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1976_curated_1
Cricetulus griseus, Cricetulus, Rodentia, Mammalia, Chordata, Metazoa

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comp(2..688)
DNA (687bp) protein (229aa)
Uncharacterized gene 50 protein n=1 Tax=Cricetulus griseus RepID=G3IM15_CRIGR
Uncharacterized gene 50 protein {ECO:0000313|EMBL:EGW15314.1}; TaxID=10029 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Cricetidae; Cricetinae; Cricetulus.;" source="Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus).;"
SCNpilot_cont_1000_p_scaffold_1976_curated_2
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

801..3083
DNA (2283bp) protein (761aa)
flagellar hook-associated protein FlaN n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039EC049
Flagellar hook-associated protein FlaN {ECO:0000313|EMBL:KIF23417.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
SCNpilot_cont_1000_p_scaffold_1976_curated_3
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3096..4049
DNA (954bp) protein (318aa)
Flagellin, putative n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ARV2_MARMM
flagellin; K02397 flagellar hook-associated protein 3 FlgL
Flagellin, putative {ECO:0000313|EMBL:ABI64985.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_1000_p_scaffold_1976_curated_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4117..5223
DNA (1107bp) protein (369aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9S7G6_9RHOB
SCNpilot_cont_1000_p_scaffold_1976_curated_5
Photorhabdus temperata, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5220..5693
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Photorhabdus temperata RepID=T0NX90_PHOTE
Uncharacterized protein {ECO:0000313|EMBL:ERT14102.1}; TaxID=1389415 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus temperata J3.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1976_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5985..6425
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J443_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE69843.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_1000_p_scaffold_1976_curated_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6624..8135)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EFV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03449.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1976_curated_8
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8458..8982
DNA (525bp) protein (175aa)
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:CDM59499.1}; EC=1.1.1.193 {ECO:0000313|EMBL:CDM59499.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Bifunctional deaminase-reductase domain protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4J6_RHIFR
bifunctional deaminase-reductase domain-containing protein
SCNpilot_cont_1000_p_scaffold_1976_curated_9
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9264..10493
DNA (1230bp) protein (410aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19]
threonine dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000378458B
Threonine dehydratase, medium form {ECO:0000313|EMBL:EJN14306.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_1000_p_scaffold_1976_curated_10
unknown

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10645..10830
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1976_curated_11
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10834..11706)
DNA (873bp) protein (291aa)
Flagellar motor protein MotA n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PV48_9CAUL
Flagellar motor protein MotA {ECO:0000313|EMBL:ESQ92221.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
flagellar motor protein MotA; K02556 chemotaxis protein MotA
SCNpilot_cont_1000_p_scaffold_1976_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11879..12388)
DNA (510bp) protein (170aa)
Response regulator receiver domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QAU2_BREDI
Response regulator receiver domain protein {ECO:0000313|EMBL:EKY25061.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
response regulator receiver protein
SCNpilot_cont_1000_p_scaffold_1976_curated_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12482..12931
DNA (450bp) protein (150aa)
Putative NUDIX hydrolase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YLU6_MOBAS
Hydrolase, MutT/nudix family {ECO:0000313|EMBL:KEC77339.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
NUDIX hydrolase
SCNpilot_cont_1000_p_scaffold_1976_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12994..13542
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036C8FF0
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABS63840.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1976_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13628..14491
DNA (864bp) protein (288aa)
putative hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ36_9SPHN
Putative hydrolase {ECO:0000313|EMBL:BAK65864.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_1000_p_scaffold_1976_curated_16
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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14546..16870
DNA (2325bp) protein (775aa)
Glucoamylase, (GLUCAN 1,4-ALPHA-GLUCOSIDASE) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F041_9PROT
Glucoamylase, (GLUCAN 1,4-ALPHA-GLUCOSIDASE) {ECO:0000313|EMBL:EAU54843.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
Glucodextranase N
SCNpilot_cont_1000_p_scaffold_1976_curated_17
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17015..18862)
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVB2_PARL1
FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:CDO58771.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1976_curated_18
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18859..21591)
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6U1_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KJR64827.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1976_curated_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(21679..22530)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVB4_PARL1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCNpilot_cont_1000_p_scaffold_1976_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22559..23590)
DNA (1032bp) protein (344aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase associated with various cellular activities AAA_3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4B9_STAND
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ADH89782.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_1976_curated_21
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23779..24390
DNA (612bp) protein (204aa)
NTP pyrophosphohydrolase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJA4_AZOSU
NTP pyrophosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_1000_p_scaffold_1976_curated_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24387..25613
DNA (1227bp) protein (409aa)
tRNA nucleotidyltransferase/poly(A) polymerase; K00970 poly(A) polymerase [EC:2.7.7.19]
PREDICTED: CCA tRNA nucleotidyltransferase 1, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18295
Polynucleotide adenylyltransferase region {ECO:0000313|EMBL:GAK45933.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_1976_curated_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25610..26518
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000382675C
Uncharacterized protein {ECO:0000313|EMBL:CDO61191.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1976_curated_24
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26515..27117)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8J5_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG77622.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_1976_curated_25
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27108..27587)
DNA (480bp) protein (160aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036CF6CB
yibK; putative aminotransferase/methyltransferase
SCNpilot_cont_1000_p_scaffold_1976_curated_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27820..28389
DNA (570bp) protein (190aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
fbcF; ubiquinol-cytochrome c reductase iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome C reductase iron-sulfur subunit n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4T9G6_9RHIZ
SCNpilot_cont_1000_p_scaffold_1976_curated_27
alpha proteobacterium RS24, Alphaproteobacteria, Proteobacteria, Bacteria

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28401..29672
DNA (1272bp) protein (424aa)
Cytochrome b n=1 Tax=alpha proteobacterium RS24 RepID=U2W942_9PROT
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
cytochrome b/b6 domain-containing protein
SCNpilot_cont_1000_p_scaffold_1976_curated_28
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

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29681..30499
DNA (819bp) protein (273aa)
Ubiquinol-Cytochrome-c reductase n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DX92_9PROT
Ubiquinol-Cytochrome-c reductase {ECO:0000313|EMBL:EJW21622.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
cytochrome b/c1; K00410 ubiquinol-cytochrome c reductase cytochrome b/c1 subunit
SCNpilot_cont_1000_p_scaffold_1976_curated_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30540..31532
DNA (993bp) protein (331aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVC6_PARL1
SCNpilot_cont_1000_p_scaffold_1976_curated_30
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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31667..31834
DNA (168bp) protein (56aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) PF9_HIRBI">RepID=C6XPF9_HIRBI
Displaying 30 items

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