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SCNpilot_cont_1000_p_scaffold_2074_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2074_curated_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1613)
DNA (1611bp) protein (537aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
UvrD/REP helicase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVW2_PARL1
SCNpilot_cont_1000_p_scaffold_2074_curated_2
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1693..1878)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B710A4
Uncharacterized protein {ECO:0000313|EMBL:EAP91571.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
SCNpilot_cont_1000_p_scaffold_2074_curated_3
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1871..2470)
DNA (600bp) protein (200aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VIY1_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KHD21308.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
SCNpilot_cont_1000_p_scaffold_2074_curated_4
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2481..2690)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YMC8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00007.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2074_curated_5
unknown

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2797..3141
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2074_curated_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3138..3857)
DNA (720bp) protein (240aa)
Spermidine synthase family protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6H3_9RHIZ
Spermidine synthase family protein {ECO:0000313|EMBL:EHH12663.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
spermidine synthase family protein
SCNpilot_cont_1000_p_scaffold_2074_curated_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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comp(3854..4999)
DNA (1146bp) protein (382aa)
signal peptide protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AB26A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
SCNpilot_cont_1000_p_scaffold_2074_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4996..6384)
DNA (1389bp) protein (463aa)
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743, ECO:0000313|EMBL:CCB67110.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Fumarate hydratase class II n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5J0_HYPSM
SCNpilot_cont_1000_p_scaffold_2074_curated_9
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6422..6931)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVX2_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KCZ65945.1}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
hypothetical protein; K09985 hypothetical protein
SCNpilot_cont_1000_p_scaffold_2074_curated_10
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6954..8126
DNA (1173bp) protein (391aa)
Glycosyl transferase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J1E1_9SPHN
Glycosyl transferase {ECO:0000313|EMBL:EQB31786.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Glycosyltransferase
SCNpilot_cont_1000_p_scaffold_2074_curated_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8155..10332
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AS95_AZOBR
Amylo-alpha-1,6-glucosidase {ECO:0000313|EMBL:AIB13473.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2074_curated_12
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10375..11718
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7UVG1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPR36358.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
major facilitator transporter
SCNpilot_cont_1000_p_scaffold_2074_curated_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12212..12640
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003602B97
Sphingomonas taxi strain 30a NODE_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26336.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2074_curated_14
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12680..13474
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] rbh
Thymidylate synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTU4_9PROT
SCNpilot_cont_1000_p_scaffold_2074_curated_15
unknown

Not on your lists

13484..13768
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2074_curated_16
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13896..15755)
DNA (1860bp) protein (620aa)
gcd; quinoprotein glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Quinoprotein glucose dehydrogenase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0IC47_9SPHN
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:KER35422.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
SCNpilot_cont_1000_p_scaffold_2074_curated_17

Not on your lists

comp(15767..16372)
DNA (606bp) protein (202aa)
Phosphonoacetaldehyde hydrolase n=1 Tax=uncultured bacterium BLR3 RepID=C0IN60_9BACT
Phosphonoacetaldehyde hydrolase {ECO:0000313|EMBL:ACN58746.1}; TaxID=506521 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR3.;"
phosphonoacetaldehyde hydrolase
Displaying 17 items

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