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SCNpilot_cont_1000_p_scaffold_4801_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_4801_curated_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1104)
DNA (1104bp) protein (368aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
Cfr family radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2J7_RHOVT
SCNpilot_cont_1000_p_scaffold_4801_curated_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1104..1625)
DNA (522bp) protein (174aa)
signal peptide protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A07E8E
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CDI09643.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_1000_p_scaffold_4801_curated_3
GWA2_OD1_47_10b, Parcubacteria, Bacteria

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comp(1750..2532)
DNA (783bp) protein (261aa)
ABC-2 type transporter {ECO:0000313|EMBL:KKU52740.1}; TaxID=1618840 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_10b.;"
ABC-2 type transporter id=2317816 bin=GWA2_OP3_52_12 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
ABC transporter; K09686 antibiotic transport system permease protein
SCNpilot_cont_1000_p_scaffold_4801_curated_4
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

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comp(2535..3284)
DNA (750bp) protein (250aa)
ABC transporter related protein; K09687 antibiotic transport system ATP-binding protein id=68474 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
ABC transporter; K09687 antibiotic transport system ATP-binding protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
SCNpilot_cont_1000_p_scaffold_4801_curated_5
GWF2_Alphaproteobacteria_58_20_curated, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3370..3903)
DNA (534bp) protein (178aa)
TRNA/rRNA methyltransferase (SpoU) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J079_POLGS
TRNA/rRNA methyltransferase (SpoU)
Tax=GWF2_Alphaproteobacteria_58_20_curated
SCNpilot_cont_1000_p_scaffold_4801_curated_6
unknown

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comp(4109..4507)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4801_curated_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4633..5922
DNA (1290bp) protein (430aa)
iron transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC05
manganese/iron transporter, NRAMP family
Manganese/iron transporter, NRAMP family {ECO:0000313|EMBL:ACG79806.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_4801_curated_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5934..6188
DNA (255bp) protein (85aa)
transglycosylase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DECE6F
Transglycosylase {ECO:0000313|EMBL:EWY42066.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
transglycosylase
SCNpilot_cont_1000_p_scaffold_4801_curated_9
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6293..7093
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0D431_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ83160.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_4801_curated_10
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7153..7470)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A142_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHM00583.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_4801_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7574..8602)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8Z3_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KIZ39893.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
Displaying 11 items

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