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SCNpilot_cont_1000_p_scaffold_2569_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2569_curated_1
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..2188)
DNA (2187bp) protein (729aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B2ED4E
putative peptidase
Putative peptidase {ECO:0000313|EMBL:BAL22429.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_cont_1000_p_scaffold_2569_curated_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2254..4032
DNA (1779bp) protein (593aa)
ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBS5_PHEZH
ATP-dependent RNA helicase, DEAD/DEAH box family
ATP-dependent RNA helicase, DEAD/DEAH box family {ECO:0000313|EMBL:ACG78122.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_2569_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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4203..5255
DNA (1053bp) protein (351aa)
Bll4347 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M46_BRADU
Diguanylate cyclase {ECO:0000313|EMBL:GAK44600.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K13590 diguanylate cyclase
SCNpilot_cont_1000_p_scaffold_2569_curated_4
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5274..5657)
DNA (384bp) protein (128aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V681_9BRAD
iscA; iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_1000_p_scaffold_2569_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5657..6022)
DNA (366bp) protein (122aa)
FeS assembly SUF system protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QU24_9RHOB
FeS assembly SUF system protein {ECO:0000313|EMBL:GAK44606.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
FeS assembly SUF system protein
SCNpilot_cont_1000_p_scaffold_2569_curated_6
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(6019..6483)
DNA (465bp) protein (155aa)
NifU family SUF system FeS assembly protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K5D7_9PROT
iscU; SUF system FeS assembly protein, NifU family
Tax=RBG_16_Euryarchaeota_68_13_curated
SCNpilot_cont_1000_p_scaffold_2569_curated_7
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6476..7723)
DNA (1248bp) protein (416aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
Cysteine desulfurase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MJH1_9RHIZ
SCNpilot_cont_1000_p_scaffold_2569_curated_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7720..8841)
DNA (1122bp) protein (374aa)
FeS assembly protein SufD n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWP5_9PROT
FeS assembly protein SufD {ECO:0000313|EMBL:EDP63146.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
sufD; FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD
SCNpilot_cont_1000_p_scaffold_2569_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8867..9616)
DNA (750bp) protein (250aa)
FeS assembly ATPase SufC n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY83_PARL1
FeS assembly ATPase SufC {ECO:0000313|EMBL:GAK44609.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein
SCNpilot_cont_1000_p_scaffold_2569_curated_10
unknown

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comp(9609..9758)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2569_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9755..11212)
DNA (1458bp) protein (486aa)
Cysteine desulfurase activator complex subunit SufB n=1 Tax=Oceanibaculum indicum P24 RepID=K2JRQ2_9PROT
FeS assembly protein SufB {ECO:0000313|EMBL:GAK44610.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB
SCNpilot_cont_1000_p_scaffold_2569_curated_12
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11212..12393)
DNA (1182bp) protein (394aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
Aminotransferase class V n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY85_PARL1
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_1000_p_scaffold_2569_curated_13
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12400..12945)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003760F7E
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KEO58573.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
iscR; transcriptional repressor of Fe-S cluster biogenesis genes; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_cont_1000_p_scaffold_2569_curated_14
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13213..13869
DNA (657bp) protein (219aa)
Alpha/beta hydrolase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J9W9_9RHOB
Alpha/beta hydrolase {ECO:0000313|EMBL:AJE47058.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
hypothetical protein; K07018
Displaying 14 items

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