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SCNpilot_cont_1000_p_scaffold_2748_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2748_curated_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..255)
DNA (255bp) protein (85aa)
ABC transporter ATP-binding protein n=1 Tax=Singularimonas variicoloris RepID=UPI00037A8A52
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZP42974.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
SCNpilot_cont_1000_p_scaffold_2748_curated_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(1181..2557)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E135B8
ankyrin
Ankyrin {ECO:0000313|EMBL:ABJ83023.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_1000_p_scaffold_2748_curated_3
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2577..3920)
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000318C811
Uncharacterized protein {ECO:0000313|EMBL:CCW16426.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2748_curated_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3917..6409)
DNA (2493bp) protein (831aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLD1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK93278.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2748_curated_5
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6721..7680)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PJH2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ94092.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
esterase; K07214 enterochelin esterase and related enzymes
SCNpilot_cont_1000_p_scaffold_2748_curated_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7747..8910)
DNA (1164bp) protein (388aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037BEC94
SCNpilot_cont_1000_p_scaffold_2748_curated_7
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9154..11511
DNA (2358bp) protein (786aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
phosphoketolase; K01636 [EC:4.1.2.-] rbh
Probable phosphoketolase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=PHK_RHOPT rbh
SCNpilot_cont_1000_p_scaffold_2748_curated_8
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11975..12937)
DNA (963bp) protein (321aa)
ABC transporter, permease protein, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IP29_RHOCS
ABC-type multidrug transport system, permease component {ECO:0000313|EMBL:KIH84117.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
ABC transporter permease; K09686 antibiotic transport system permease protein
SCNpilot_cont_1000_p_scaffold_2748_curated_9
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13125..14039)
DNA (915bp) protein (305aa)
Multidrug ABC transporter ATP-binding protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4Q2E7_9CAUL
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESQ92010.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
putative ABC transporter; ATP-binding component
SCNpilot_cont_1000_p_scaffold_2748_curated_10
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14036..14857)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344C1C7
Membrane-fusion protein {ECO:0000313|EMBL:KIH84115.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
membrane-fusion protein; K01993 HlyD family secretion protein
SCNpilot_cont_1000_p_scaffold_2748_curated_11
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14857..15504)
DNA (648bp) protein (216aa)
Transcriptional regulator, TetR family protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IP26_RHOCS
transcriptional regulator, TetR family protein
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:ACI99446.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_1000_p_scaffold_2748_curated_12
unknown

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15785..15958
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2748_curated_13
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16095..16733)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CF56_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN04509.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2748_curated_14
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16720..17289)
DNA (570bp) protein (190aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HSV1_9RHIZ
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJN04508.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_2748_curated_15
unknown

Not on your lists

17424..17816
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2748_curated_16
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17876..18109)
DNA (234bp) protein (78aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_1000_p_scaffold_2748_curated_17

Not on your lists

comp(18149..18952)
DNA (804bp) protein (268aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
pseudouridine synthase Rsu; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07T48_RHOP5
SCNpilot_cont_1000_p_scaffold_2748_curated_18

Not on your lists

18968..19420
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
CMP/dCMP deaminase zinc-binding n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQC4_METSB
CMP/dCMP deaminase
SCNpilot_cont_1000_p_scaffold_2748_curated_19
unknown

Not on your lists

comp(19696..19995)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2748_curated_20
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20157..21101)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDV1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA90476.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_1000_p_scaffold_2748_curated_21
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21242..22261
DNA (1020bp) protein (340aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFQ4_9SPHN
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHJ59832.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
AraC family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_2748_curated_22
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22351..23610)
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T8V6_BURPP
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACD20769.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_cont_1000_p_scaffold_2748_curated_23
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23718..24338)
DNA (621bp) protein (207aa)
Phosphoesterase, PA-phosphatase related n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SQ03_RHOPH
Phosphoesterase, PA-phosphatase related
Phosphoesterase, PA-phosphatase related {ECO:0000313|EMBL:CCG07273.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCNpilot_cont_1000_p_scaffold_2748_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24493..25776)
DNA (1284bp) protein (428aa)
phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HQ2_RHOP5
SCNpilot_cont_1000_p_scaffold_2748_curated_25
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25846..26136
DNA (291bp) protein (97aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
exodeoxyribonuclease VII large subunit n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B78886
Displaying 25 items

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