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SCNpilot_cont_1000_p_scaffold_1472_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1472_curated_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25..1059)
DNA (1035bp) protein (345aa)
cysteine synthase A; K01738 cysteine synthase A [EC:2.5.1.47]
cysteine synthase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000346C76F
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:EFI51876.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_1000_p_scaffold_1472_curated_2
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1091..2473)
DNA (1383bp) protein (461aa)
deoxyribodipyrimidine photolyase family protein; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photolyase family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JR25_9PROT
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KIF25857.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_cont_1000_p_scaffold_1472_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2505..3095)
DNA (591bp) protein (197aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase I n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJ55_BEII9
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:GAK46819.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_1472_curated_4
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3085..3927)
DNA (843bp) protein (281aa)
Putative aminomethyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKP7_AZOBR
putative aminomethyltransferase
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_p_scaffold_1472_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..5371
DNA (1305bp) protein (435aa)
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037C9865
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5447..6106
DNA (660bp) protein (220aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMG1_AZOBR
Putative amino acid efflux protein {ECO:0000313|EMBL:CDO60507.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
lysine exporter protein (LYSE/YGGA)
SCNpilot_cont_1000_p_scaffold_1472_curated_7
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6232..6759
DNA (528bp) protein (176aa)
FKBP-type peptidyl-prolyl cis-trans isomerases 1 (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bacteroides RepID=C3QRS9_9BACE
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
SCNpilot_cont_1000_p_scaffold_1472_curated_8
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6773..9430
DNA (2658bp) protein (886aa)
Glycosyl transferase family 2 id=1724191 bin=GWB2_Desulfobacterales_56_26 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
exo-beta-1,3-glucanase
Tax=GWB2_Desulfobacterales_56_26_curated
SCNpilot_cont_1000_p_scaffold_1472_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9502..9717
DNA (216bp) protein (72aa)
Immunity protein, putative n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN58_NIAKG
immunity protein
Immunity protein, putative {ECO:0000313|EMBL:AEV97743.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_10
unknown

Not on your lists

comp(9725..9904)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1472_curated_11
unknown

Not on your lists

comp(9901..10032)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1472_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10029..11012)
DNA (984bp) protein (328aa)
Putative FAD-binding dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9Q0_AZOL4
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:GAK46113.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
FAD linked oxidase domain-containing protein
SCNpilot_cont_1000_p_scaffold_1472_curated_13
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(11009..11947)
DNA (939bp) protein (313aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR64_PARL1
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_cont_1000_p_scaffold_1472_curated_14
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11994..12890)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003803D93
MscS mechanosensitive ion channel; K03442 small conductance mechanosensitive channel
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_cont_1000_p_scaffold_1472_curated_15
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12969..13748
DNA (780bp) protein (260aa)
Putative nuclease (SNase domain) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AF59_AZOBR
putative nuclease (SNase domain)
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_p_scaffold_1472_curated_16
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13861..14439)
DNA (579bp) protein (193aa)
CarD family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI000382A741
CarD-like transcriptional regulator {ECO:0000313|EMBL:CDO59178.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1472_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14724..15062)
DNA (339bp) protein (113aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CX6_MESSB
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABG64749.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_18
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15169..15429)
DNA (261bp) protein (87aa)
S4 domain protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LTJ6_RUEPO
Heat shock protein {ECO:0000313|EMBL:KFE36707.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
SCNpilot_cont_1000_p_scaffold_1472_curated_19
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15426..17948)
DNA (2523bp) protein (841aa)
Helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTT4_PARL1
ATP-DEPENDENT DNA HELICASE {ECO:0000313|EMBL:CDO59175.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
helicase domain-containing protein
SCNpilot_cont_1000_p_scaffold_1472_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18291..19157)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTU0_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63323.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_21
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19411..19668
DNA (258bp) protein (86aa)
50S ribosomal protein L28 n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B47DD7
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000255|HAMAP-Rule:MF_00373}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19773..21626)
DNA (1854bp) protein (618aa)
cobalt chelatase large subunit; K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobalt chelatase, pCobT subunit {ECO:0000313|EMBL:ABS63331.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABS63331.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Cobalt chelatase, pCobT subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTU8_PARL1
SCNpilot_cont_1000_p_scaffold_1472_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21682..22662)
DNA (981bp) protein (327aa)
cobaltochelatase, CobS subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobaltochelatase, CobS subunit n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVW9_RHOCS
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KGM34323.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_1000_p_scaffold_1472_curated_24
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22723..23343)
DNA (621bp) protein (207aa)
molecular chaperone DnaJ n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A01BAC
molecular chaperone DnaJ
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ABI66570.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_1000_p_scaffold_1472_curated_25
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23448..23750
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PE57_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ86391.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
stress-induced morphogen; K05527 BolA protein
SCNpilot_cont_1000_p_scaffold_1472_curated_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23779..25059)
DNA (1281bp) protein (427aa)
Putative Mg2+ and Co2+ transporter CorB n=1 Tax=Caulobacter crescentus OR37 RepID=R0E5S3_CAUCE
Conserved protein {ECO:0000313|EMBL:GAK45418.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
magnesium and cobalt efflux protein CorB
SCNpilot_cont_1000_p_scaffold_1472_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25102..26211)
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-dehydroquinate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTV3_PARL1
SCNpilot_cont_1000_p_scaffold_1472_curated_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26208..26756)
DNA (549bp) protein (183aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
3-dehydroquinate synthase; K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
Shikimate kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K217_9PROT
SCNpilot_cont_1000_p_scaffold_1472_curated_29
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26816..27745
DNA (930bp) protein (310aa)
tyrosine recombinase XerD n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A906C7
integrase/recombinase; K04763 integrase/recombinase XerD
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_1472_curated_30
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27865..28815
DNA (951bp) protein (317aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endoph
acetyl-CoA carboxylase, carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10B4F
Displaying items 1-30 of 33 in total

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