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SCNpilot_cont_1000_p_scaffold_865_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_865_curated_1
Streptomyces sp. SPB78, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..317)
DNA (315bp) protein (105aa)
oxidoreductase n=1 Tax=Streptomyces sp. SA3_actF RepID=UPI00020004BE
Oxidoreductase {ECO:0000313|EMBL:EFL03430.1}; TaxID=591157 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SPB78).;"
aldo/keto reductase
SCNpilot_cont_1000_p_scaffold_865_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(314..1576)
DNA (1263bp) protein (421aa)
L-fucose:H+ symporter permease n=1 Tax=Caulobacter sp. AP07 RepID=J3AUG6_9CAUL
L-fucose:H+ symporter permease {ECO:0000313|EMBL:EJL38151.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
L-fucose permease; K02429 MFS transporter, FHS family, L-fucose permease
SCNpilot_cont_1000_p_scaffold_865_curated_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1727..3226)
DNA (1500bp) protein (500aa)
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7]
D-galactarate dehydratase/Altronate hydrolase domain protein {ECO:0000313|EMBL:ACL61352.1}; EC=4.2.1.42 {ECO:0000313|EMBL:ACL61352.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
D-galactarate dehydratase/Altronate hydrolase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDI6_METNO
SCNpilot_cont_1000_p_scaffold_865_curated_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3286..3627
DNA (342bp) protein (114aa)
hypothetical protein; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWC8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00609.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_1000_p_scaffold_865_curated_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(3624..4895)
DNA (1272bp) protein (424aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RN2_SOLUE
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABJ87688.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_1000_p_scaffold_865_curated_6
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5017..5988
DNA (972bp) protein (324aa)
Putative demethylmenaquinone methyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z895_SPHJU
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:AJR23524.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
putative demethylmenaquinone methyltransferase
SCNpilot_cont_1000_p_scaffold_865_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5989..7113)
DNA (1125bp) protein (375aa)
Beta-lactamase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWE7_9BACT
Beta-lactamase {ECO:0000313|EMBL:EDY21739.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
beta-lactamase
SCNpilot_cont_1000_p_scaffold_865_curated_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7268..8191
DNA (924bp) protein (308aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
5-dehydro-4-deoxyglucarate dehydratase; K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039FB208
SCNpilot_cont_1000_p_scaffold_865_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8211..9122
DNA (912bp) protein (304aa)
Transcriptional regulator (Fragment) n=1 Tax=Caulobacter sp. AP07 RepID=J2ZN80_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL20751.1}; Flags: Precursor; Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
transcriptional regulator, LysR family
SCNpilot_cont_1000_p_scaffold_865_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9271..10590
DNA (1320bp) protein (440aa)
D-galactonate transporter n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DIF7_SPHYA
D-galactonate transporter {ECO:0000313|EMBL:EKU77240.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_865_curated_11
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10598..11935
DNA (1338bp) protein (446aa)
glucarate dehydratase; K01706 glucarate dehydratase [EC:4.2.1.40]
Glucarate dehydratase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJ41_METNO
Glucarate dehydratase {ECO:0000313|EMBL:ACL61836.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_1000_p_scaffold_865_curated_12
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11954..13486
DNA (1533bp) protein (511aa)
galactarate dehydratase; K01708 galactarate dehydratase [EC:4.2.1.42]
Galactarate dehydratase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IBB0_AZOC5
Galactarate dehydratase {ECO:0000313|EMBL:BAF88634.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_1000_p_scaffold_865_curated_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13531..15147)
DNA (1617bp) protein (539aa)
choline dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000372335F
Choline dehydrogenase {ECO:0000313|EMBL:KJC62669.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
GMC-type oxidoreductase
SCNpilot_cont_1000_p_scaffold_865_curated_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15276..15986
DNA (711bp) protein (237aa)
Putative membrane protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQI8_SINAD
Uncharacterized protein {ECO:0000313|EMBL:KGM35411.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_865_curated_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16190..16561
DNA (372bp) protein (124aa)
PRC-barrel domain protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C585_HYPNA
PRC-barrel domain protein {ECO:0000313|EMBL:CDX35691.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
PRC-barrel domain-containing protein
SCNpilot_cont_1000_p_scaffold_865_curated_16
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16632..16892
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJK8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFB10078.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_865_curated_17
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16896..18218)
DNA (1323bp) protein (441aa)
amidohydrolase; K01465 dihydroorotase [EC:3.5.2.3]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000360AF34
Amidohydrolase {ECO:0000313|EMBL:ADW71093.1}; Flags: Precursor;; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
SCNpilot_cont_1000_p_scaffold_865_curated_18
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(18215..19792)
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037A56B5
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:ADW71094.1}; Flags: Precursor;; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
SCNpilot_cont_1000_p_scaffold_865_curated_19
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19804..20286)
DNA (483bp) protein (161aa)
endoribonuclease L-PSP n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B6DCD9
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AEU37775.1}; Flags: Precursor;; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
SCNpilot_cont_1000_p_scaffold_865_curated_20
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20379..21062)
DNA (684bp) protein (228aa)
TonB family protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WSN5_9SPHN
TonB family protein {ECO:0000313|EMBL:EJK85265.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
TonB family protein; K03832 periplasmic protein TonB
SCNpilot_cont_1000_p_scaffold_865_curated_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21059..22267)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZH77_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS90786.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_1000_p_scaffold_865_curated_22
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22278..22973)
DNA (696bp) protein (232aa)
PKHD-type hydroxylase DB31_3398 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
putative hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase RPE_4577 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Y4577_RHOP5
SCNpilot_cont_1000_p_scaffold_865_curated_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22976..25357)
DNA (2382bp) protein (794aa)
TonB-dependent siderophore receptor n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3A9_STAND
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ADH89668.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_865_curated_24
unknown

Not on your lists

comp(25458..25640)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_865_curated_25
unknown

Not on your lists

comp(25798..26253)
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_865_curated_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26303..26689)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV62_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96899.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_cont_1000_p_scaffold_865_curated_27
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26852..27769)
DNA (918bp) protein (306aa)
Probable DNA repair protein Caul_1773 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T3L6_CAUSK
Ku protein; K10979 DNA end-binding protein Ku
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_865_curated_28
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27841..30498
DNA (2658bp) protein (886aa)
DNA ligase D (EC:6.5.1.1)
DNA ligase D n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HZA0_9BRAD
DNA ligase D {ECO:0000313|EMBL:EJN10421.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_1000_p_scaffold_865_curated_29
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30495..31307)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SY22_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70345.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_865_curated_30
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31432..31920
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C7D58
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU49392.1}; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
Displaying items 1-30 of 33 in total

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