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SCNpilot_cont_1000_p_scaffold_1418_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1418_curated_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..785
DNA (783bp) protein (261aa)
ATPase AAA n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000360B26F
Putative two-component response regulator {ECO:0000313|EMBL:GAO38936.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
response regulator
SCNpilot_cont_1000_p_scaffold_1418_curated_2
RLO_PLX_64_10, Bacteria

Not on your lists

775..2127
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037FD70C
response regulator receiver domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_cont_1000_p_scaffold_1418_curated_3
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2182..4506)
DNA (2325bp) protein (775aa)
quinoprotein glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Glucose dehydrogenase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NH95_9SPHN
Glucose dehydrogenase {ECO:0000313|EMBL:AJR25391.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_4
unknown

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comp(4666..4884)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1418_curated_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4911..5966)
DNA (1056bp) protein (352aa)
ferredoxin oxidoreductase beta subunit; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=mine drainage metagenome RepID=T0YFS0_9ZZZZ
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_cont_1000_p_scaffold_1418_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5963..7786)
DNA (1824bp) protein (608aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035EC1DA
2-oxoacid:acceptor oxidoreductase, alpha subunit {ECO:0000313|EMBL:EJL75596.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_7
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7774..9519)
DNA (1746bp) protein (582aa)
NADPH-dependent glutamate synthase beta chain-like oxidoreductase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QFH7_9BRAD
NADPH-dependent glutamate synthase beta chain-like oxidoreductase {ECO:0000313|EMBL:EIG58533.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative glutamate synthase small subunit
SCNpilot_cont_1000_p_scaffold_1418_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9826..10755)
DNA (930bp) protein (310aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJT5_AFIFE
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ETR75520.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_9
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10795..12027)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036DEED6
Uncharacterized protein {ECO:0000313|EMBL:KFN50828.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Na+/H+-dicarboxylate symporter
SCNpilot_cont_1000_p_scaffold_1418_curated_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12199..13803
DNA (1605bp) protein (535aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
Amidohydrolase family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHV1_9SPHN
Amidohydrolase family protein {ECO:0000313|EMBL:AJA07723.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13842..14825
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z7J8_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI98467.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_1000_p_scaffold_1418_curated_12
Mycobacterium triplex, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14998..15834
DNA (837bp) protein (279aa)
aspartyl/asparaginyl beta-hydroxylase-like dioxygenase; K12979 beta-hydroxylase [EC:1.14.11.-]
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2J7A6_9PSED
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase {ECO:0000313|EMBL:CDO90676.1}; TaxID=47839 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium triplex.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_13
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15968..16351)
DNA (384bp) protein (128aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Uncharacterized protein n=2 Tax=Bradyrhizobium RepID=H0SFP2_9BRAD
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1418_curated_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..16558)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EI08_BRASB
hypothetical protein
Sulfurtransferase {ECO:0000313|EMBL:KHK91123.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_cont_1000_p_scaffold_1418_curated_15
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16572..17849)
DNA (1278bp) protein (426aa)
Sulfide-quinone reductase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TRB6_9BRAD
Sulfide-quinone reductase {ECO:0000313|EMBL:CCE09004.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
sulfide-quinone reductase
SCNpilot_cont_1000_p_scaffold_1418_curated_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17987..18376
DNA (390bp) protein (130aa)
ArsR family transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030F98D7
Putative transcriptional regulatory protein {ECO:0000313|EMBL:KGJ66242.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1418_curated_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18345..18695
DNA (351bp) protein (117aa)
Rhodanese-related sulfurtransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBM1_PHEZH
rhodanese-related sulfurtransferase
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:ACG76481.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_1000_p_scaffold_1418_curated_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18699..19697
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJ56_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11022.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1418_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19694..22918
DNA (3225bp) protein (1075aa)
Acriflavin resistance protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VE76_RHOPX
Multidrug transporter AcrB {ECO:0000313|EMBL:KIZ45208.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acriflavin resistance protein
SCNpilot_cont_1000_p_scaffold_1418_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22915..23706
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000374396A
Conserved protein {ECO:0000313|EMBL:GAK44646.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K07090
SCNpilot_cont_1000_p_scaffold_1418_curated_21
unknown

Not on your lists

comp(23751..23915)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1418_curated_22
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23912..26083)
DNA (2172bp) protein (724aa)
Heavy metal translocating P-type ATPase n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AQI9_MARMM
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABI65448.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_1000_p_scaffold_1418_curated_23
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26071..26562)
DNA (492bp) protein (164aa)
Ferredoxin, putative n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UHD2_9RHOB
Ferredoxin, putative {ECO:0000313|EMBL:EAP90203.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
FixH family protein
SCNpilot_cont_1000_p_scaffold_1418_curated_24
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26559..28067)
DNA (1509bp) protein (503aa)
(Fe-S)-binding protein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B6B149
4Fe-4S ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABI65446.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_1000_p_scaffold_1418_curated_25
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28079..28948)
DNA (870bp) protein (290aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Caulobacter crescentus OR37 RepID=R0CYC7_CAUCE
cytochrome c oxidase, cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_1000_p_scaffold_1418_curated_26
unknown

Not on your lists

comp(28948..29112)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1418_curated_27
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29115..29846)
DNA (732bp) protein (244aa)
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVU7_CAUSK
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:ABZ71565.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_1418_curated_28
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29843..31489)
DNA (1647bp) protein (549aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:GAM98174.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAM98174.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
cytochrome c oxidase, cbb3-type subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
cytochrome C oxidase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B7A6E0
SCNpilot_cont_1000_p_scaffold_1418_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31847..32341)
DNA (495bp) protein (165aa)
OmpW family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRR6_PARL1
OmpW family protein; K07275 outer membrane protein
OmpW family protein {ECO:0000313|EMBL:ABS62599.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 29 items

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