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SCNpilot_cont_1000_p_scaffold_1504_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1504_curated_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..442
DNA (441bp) protein (147aa)
PREDICTED: leucine--tRNA ligase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17AFC
hypothetical protein; K03643 LPS-assembly lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EKE78512.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_1000_p_scaffold_1504_curated_2
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

439..1464
DNA (1026bp) protein (342aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSL5_PARL1
Putative DNA polymerase III subunit delta {ECO:0000313|EMBL:CCQ75606.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
SCNpilot_cont_1000_p_scaffold_1504_curated_3
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1464..2225
DNA (762bp) protein (254aa)
hisF; imidazole glycerol phosphate synthase, subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013, ECO:0000313|EMBL:CCJ06277.1};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
imidazole glycerol phosphate synthase n=1 Tax=Methylocystis rosea RepID=UPI000369C15D
SCNpilot_cont_1000_p_scaffold_1504_curated_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2276..3232
DNA (957bp) protein (319aa)
CHAD domain containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSG9_PARL1
Metal-chelation protein CHAD {ECO:0000313|EMBL:KJB97616.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
CHAD domain-containing protein
SCNpilot_cont_1000_p_scaffold_1504_curated_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3193..3840)
DNA (648bp) protein (216aa)
Putative phosphoglycerate mutase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7M3_AZOL4
Putative Phosphoglycerate mutase {ECO:0000313|EMBL:CCQ74922.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
putative phosphoglycerate mutase
SCNpilot_cont_1000_p_scaffold_1504_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3928..4722)
DNA (795bp) protein (265aa)
Exodeoxyribonuclease III n=1 Tax=Oceanibaculum indicum P24 RepID=K2KM60_9PROT
Exodeoxyribonuclease III {ECO:0000313|EMBL:EKE78560.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
exodeoxyribonuclease III
SCNpilot_cont_1000_p_scaffold_1504_curated_7
unknown

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4986..5117
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1504_curated_8
unknown

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5141..5272
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1504_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5277..6347)
DNA (1071bp) protein (357aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphapr
gcp; glycoprotease family; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2P426_9RHIZ
SCNpilot_cont_1000_p_scaffold_1504_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6389..7087
DNA (699bp) protein (233aa)
uroporphyrinogen III synthase HEM4; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
uroporphyrinogen-III synthase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6E541
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:ABS62970.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1504_curated_11
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7355..8875
DNA (1521bp) protein (507aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKN4_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG11057.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_1000_p_scaffold_1504_curated_12
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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8909..9856
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQF3_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU59799.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_1000_p_scaffold_1504_curated_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10006..10968
DNA (963bp) protein (321aa)
Transglutaminase domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKN6_CAUST
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ADG11059.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_1000_p_scaffold_1504_curated_14
unknown

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11083..11451
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1504_curated_15
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11448..11792)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YD48_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01234.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1504_curated_16
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12107..13858)
DNA (1752bp) protein (584aa)
flbA n=1 Tax=Ponticaulis koreensis RepID=UPI0003B64A7E
flbA; FlbA protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_1504_curated_17
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14001..14396
DNA (396bp) protein (132aa)
Flagellar FlbT family protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AN81_MARMM
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:GAN00269.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
flbT; flagellar biosynthesis repressor FlbT; K06601 flagellar protein FlbT
SCNpilot_cont_1000_p_scaffold_1504_curated_18
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14386..14733
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000360FE06
Protein FlaF {ECO:0000313|EMBL:GAK34526.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
flaF; flagellar biosynthesis regulatory protein FlaF; K06602 flagellar protein FlaF
SCNpilot_cont_1000_p_scaffold_1504_curated_19
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

14982..15809
DNA (828bp) protein (276aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039DBC07
Flagellin {ECO:0000313|EMBL:KIF26036.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellin domain-containing protein; K02406 flagellin
SCNpilot_cont_1000_p_scaffold_1504_curated_20
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16203..17030
DNA (828bp) protein (276aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A05C03
Flagellin {ECO:0000313|EMBL:KIF26036.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellin domain-containing protein
SCNpilot_cont_1000_p_scaffold_1504_curated_21
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17188..19188)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39YI3_GEOMG
Glycoside hydrolase family 57 {ECO:0000313|EMBL:KIH75710.1}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
glycoside hydrolase family protein
SCNpilot_cont_1000_p_scaffold_1504_curated_22
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19185..20405)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A5I9_PELCD
biotin carboxylase
Uncharacterized protein {ECO:0000313|EMBL:ABA88368.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
SCNpilot_cont_1000_p_scaffold_1504_curated_23
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20405..21160)
DNA (756bp) protein (252aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR id=4919085 bin=GWC2_Pelobacter_58_13 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
SCNpilot_cont_1000_p_scaffold_1504_curated_24
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21157..21738)
DNA (582bp) protein (194aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase central region id=4919087 bin=GWC2_Pelobacter_58_13 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
Displaying 24 items

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