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SCNpilot_cont_1000_p_scaffold_1883_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1883_curated_1
unknown

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2..94
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1883_curated_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(95..850)
DNA (756bp) protein (252aa)
Glycosyl transferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P406_AZOS1
Glycosyl transferase {ECO:0000313|EMBL:AIB14271.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
glycosyl transferase
SCNpilot_cont_1000_p_scaffold_1883_curated_3
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(884..1546)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003740072
Surface antigen {ECO:0000313|EMBL:GAM98431.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
CHAP domain-containing protein
SCNpilot_cont_1000_p_scaffold_1883_curated_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1890..2471)
DNA (582bp) protein (194aa)
Antioxidant, AhpC/TSA family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1N7_9GAMM
Antioxidant, AhpC/TSA family protein {ECO:0000313|EMBL:EIL93378.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peroxiredoxin
SCNpilot_cont_1000_p_scaffold_1883_curated_5
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2607..3008
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036DB3D4
Putative dioxygenase {ECO:0000313|EMBL:KIH83554.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1883_curated_6
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3018..3587)
DNA (570bp) protein (190aa)
Elongation factor P n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=EFP_RHOP5
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
elongation factor P; K02356 elongation factor P
SCNpilot_cont_1000_p_scaffold_1883_curated_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3660..4691
DNA (1032bp) protein (344aa)
lysine--tRNA ligase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000313|EMBL:ABZ69893.1}; EC=6.1.1.6 {ECO:0000313|EMBL:ABZ69893.1};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
Lysine--tRNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SUL5_CAUSK
SCNpilot_cont_1000_p_scaffold_1883_curated_8
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4788..5993
DNA (1206bp) protein (402aa)
Fosmidomycin resistance protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7C25
fsr; fosmidomycin resistance protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AJX78388.1}; TaxID=1249472 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR2543.;"
SCNpilot_cont_1000_p_scaffold_1883_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5990..6961
DNA (972bp) protein (324aa)
hypothetical protein; K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
L-lysine 2,3-aminomutase {ECO:0000313|EMBL:ABJ06865.1}; EC=5.4.3.2 {ECO:0000313|EMBL:ABJ06865.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
L-lysine 2,3-aminomutase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MG9_RHOP5
SCNpilot_cont_1000_p_scaffold_1883_curated_10
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7094..7738)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INZ2_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI99412.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_1000_p_scaffold_1883_curated_11
unknown

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comp(7851..8525)
DNA (675bp) protein (225aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1883_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8576..9682)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CY70_CAUCE
Curli production assembly/transport component CsgG {ECO:0000313|EMBL:CDO58382.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
HfaB protein; K13586 holdfast attachment protein HfaB
SCNpilot_cont_1000_p_scaffold_1883_curated_13
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9708..10106)
DNA (399bp) protein (133aa)
endonuclease n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003691537
Holdfast attachment protein HfaA {ECO:0000313|EMBL:KDP93077.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
hfaA protein; K13585 holdfast attachment protein HfaA
SCNpilot_cont_1000_p_scaffold_1883_curated_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10400..11122
DNA (723bp) protein (241aa)
Rhomboid-like protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IMW3_AZOC5
rhomboid-like protein
Rhomboid-like protein {ECO:0000313|EMBL:BAF89667.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_1000_p_scaffold_1883_curated_15
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11187..12125
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y482_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGX99674.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1883_curated_16
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12133..15237)
DNA (3105bp) protein (1035aa)
multidrug transporter n=1 Tax=Dyella japonica RepID=UPI000366E84F
Multidrug transport protein (RND family) {ECO:0000313|EMBL:CDI00997.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_cont_1000_p_scaffold_1883_curated_17
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..16430)
DNA (1197bp) protein (399aa)
Efflux transporter, RND family, MFP subunit id=3929936 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
efflux transporter, RND family, MFP subunit
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_cont_1000_p_scaffold_1883_curated_18
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16831..17916
DNA (1086bp) protein (362aa)
GTP-binding protein TypA n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IYB4_RHOCS
typA; GTP-binding protein TypA; K06207 GTP-binding protein
GTP-binding protein TypA {ECO:0000313|EMBL:ACJ01288.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Displaying 18 items

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