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SCNpilot_cont_1000_p_scaffold_2138_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2138_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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107..2002
DNA (1896bp) protein (632aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07NF4_RHOP5
SCNpilot_cont_1000_p_scaffold_2138_curated_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2005..3519
DNA (1515bp) protein (505aa)
Anthranilate synthase subunit I {ECO:0000313|EMBL:KJB93561.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KJB93561.1};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase component I n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYK6_STAND
SCNpilot_cont_1000_p_scaffold_2138_curated_3
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3712..4794)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NV07_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJB93559.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_cont_1000_p_scaffold_2138_curated_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4844..6388)
DNA (1545bp) protein (515aa)
Drug resistance MFS transporter, drug:H+ antiporter-1 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVP2_9SPHN
DNA, contig: SP612 {ECO:0000313|EMBL:GAN12663.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_1000_p_scaffold_2138_curated_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6385..7536)
DNA (1152bp) protein (384aa)
Secretion protein HlyD family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBB0_SPHWW
secretion protein HlyD family protein; K03543 multidrug resistance protein A
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABQ69576.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_1000_p_scaffold_2138_curated_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7541..8962)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000360CFCB
RND efflux system outer membrane lipoprotein
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ABQ69577.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_1000_p_scaffold_2138_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8959..9513)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035DE5A8
MarR family transcriptional regulator {ECO:0000313|EMBL:AIT07116.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transcriptional regulator, MarR family
SCNpilot_cont_1000_p_scaffold_2138_curated_8
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9659..9910
DNA (252bp) protein (84aa)
Excinuclease ABC n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H048_9PROT
Excinuclease ABC {ECO:0000313|EMBL:EKV30419.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
excinuclease ABC subunit C
SCNpilot_cont_1000_p_scaffold_2138_curated_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9980..11011
DNA (1032bp) protein (344aa)
beta-lactamase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7E9
beta-lactamase-like protein
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_1000_p_scaffold_2138_curated_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11023..12111)
DNA (1089bp) protein (363aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Oceanibaculum indicum P24 RepID=K2KMM1_9PROT
SCNpilot_cont_1000_p_scaffold_2138_curated_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12102..14111)
DNA (2010bp) protein (670aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] rbh
Ribonucleoside-diphosphate reductase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J6Q6_9PROT
SCNpilot_cont_1000_p_scaffold_2138_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14280..15056)
DNA (777bp) protein (259aa)
Hemin import ATP-binding protein HmuV {ECO:0000313|EMBL:AKH43845.1}; EC=3.6.3.- {ECO:0000313|EMBL:AKH43845.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I6V0_9SPHN
fecE2; iron-dicitrate transporter subunit ; ATP-binding component of ABC superfamily; KpLE2 phage-like element
SCNpilot_cont_1000_p_scaffold_2138_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15053..16039)
DNA (987bp) protein (329aa)
transport system permease; K02015 iron complex transport system permease protein id=12495036 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Hemin transport system permease protein HmuU {ECO:0000313|EMBL:AKH43846.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_cont_1000_p_scaffold_2138_curated_14
unknown

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comp(16036..16248)
DNA (213bp) protein (71aa)

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Displaying 14 items

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