ggKbase home page

SCNpilot_cont_1000_p_scaffold_3334_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3334_curated_1
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233..1129)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LWM7_9PROT
LysR family transcriptional regulator {ECO:0000313|EMBL:KJE35825.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
LysR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_3334_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1154..2149)
DNA (996bp) protein (332aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
thioredoxin reductase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B645B2
SCNpilot_cont_1000_p_scaffold_3334_curated_3
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2364..2843
DNA (480bp) protein (160aa)
Proline dehydrogenase transcriptional activator n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SRA2_9RHOB
Putative leucine-responsive regulatory protein {ECO:0000313|EMBL:KCV82988.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlanticum.;"
putative leucine-responsive regulatory protein
SCNpilot_cont_1000_p_scaffold_3334_curated_4
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2923..3687
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E63B5A
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_3334_curated_5
unknown

Not on your lists

3740..4417
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3334_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4448..6511
DNA (2064bp) protein (688aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037C1AE7
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29243.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
metalloendopeptidase
SCNpilot_cont_1000_p_scaffold_3334_curated_7
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6637..7713
DNA (1077bp) protein (359aa)
naringenin-chalcone synthase (EC:2.3.1.74)
Naringenin-chalcone synthase {ECO:0000313|EMBL:ACB26673.1}; EC=2.3.1.74 {ECO:0000313|EMBL:ACB26673.1};; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
Naringenin-chalcone synthase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M714_METRJ
SCNpilot_cont_1000_p_scaffold_3334_curated_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

7714..8385
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003778B36
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SCNpilot_cont_1000_p_scaffold_3334_curated_9
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8378..9529
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Legionella tunisiensis RepID=UPI0002E0254C
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SCNpilot_cont_1000_p_scaffold_3334_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9537..10211)
DNA (675bp) protein (225aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6R6_9BRAD
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K05595 multiple antibiotic resistance protein
SCNpilot_cont_1000_p_scaffold_3334_curated_11
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10288..11274
DNA (987bp) protein (329aa)
PQQ-dependent enzyme-like protein; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
PQQ-dependent enzyme-like protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V2B8_TERSS
PQQ-dependent enzyme-like protein {ECO:0000313|EMBL:ADV81251.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
Displaying 11 items

View Taxonomy