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SCNpilot_cont_1000_p_scaffold_13533_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_13533_curated_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..620)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IXP9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33555.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_1000_p_scaffold_13533_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(617..1792)
DNA (1176bp) protein (392aa)
P-type conjugative transfer protein TrbL n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID52_XANP2
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ABS65945.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_p_scaffold_13533_curated_3
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2039..2773)
DNA (735bp) protein (245aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9U1_CAUSK
P-type conjugative transfer protein TrbJ
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:ABZ74490.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_13533_curated_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3254..5068)
DNA (1815bp) protein (605aa)
CagE TrbE VirB component of type IV transporter system n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9U2_CAUSK
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
CagE TrbE VirB component of type IV transporter system {ECO:0000313|EMBL:ABZ74491.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_13533_curated_5
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5072..5332)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J6F9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33561.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
type IV secretory pathway VirB3 family protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_1000_p_scaffold_13533_curated_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5332..5649)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J9P7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33562.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_1000_p_scaffold_13533_curated_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5693..6637)
DNA (945bp) protein (315aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9Q0_CAUSK
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ABZ74449.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_13533_curated_8
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

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comp(6959..7633)
DNA (675bp) protein (225aa)
Conjugal transfer protein TraG n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IJJ5_PHYMF
traG; conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
Conjugal transfer protein TraG {ECO:0000313|EMBL:BAM05433.1}; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
Displaying 8 items

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