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SCNpilot_cont_1000_p_scaffold_1518_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1518_curated_1
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..583
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037203F3
Putative oxidoreductase {ECO:0000313|EMBL:EXF45049.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
oxidoreductase
SCNpilot_cont_1000_p_scaffold_1518_curated_2
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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662..1033
DNA (372bp) protein (124aa)
Cytochrome c, class I n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVX0_9PROT
Cytochrome c, class I {ECO:0000313|EMBL:EGY02582.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
cytochrome c; K08738 cytochrome c
SCNpilot_cont_1000_p_scaffold_1518_curated_3

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1246..1995
DNA (750bp) protein (250aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YG88_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KKN94490.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
SCNpilot_cont_1000_p_scaffold_1518_curated_4
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

1992..2936
DNA (945bp) protein (315aa)
electron transfer flavoprotein subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314F15B
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:KIF13522.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_cont_1000_p_scaffold_1518_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2948..3823
DNA (876bp) protein (292aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:AHB47526.1}; EC=1.1.1.157 {ECO:0000313|EMBL:AHB47526.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003760BFD
SCNpilot_cont_1000_p_scaffold_1518_curated_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3941..4504)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3C94B
thiol:disulfide interchange protein
Thiol:disulfide interchange protein {ECO:0000313|EMBL:BAI75941.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_1000_p_scaffold_1518_curated_7
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4537..5919
DNA (1383bp) protein (461aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R012_9RHOB
SCNpilot_cont_1000_p_scaffold_1518_curated_8
unknown

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5916..6059
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1518_curated_9
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6170..7438
DNA (1269bp) protein (423aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
Diaminopimelate decarboxylase n=1 Tax=Roseovarius sp. 217 RepID=A3W4J8_9RHOB
diaminopimelate decarboxylase
SCNpilot_cont_1000_p_scaffold_1518_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7389..9737
DNA (2349bp) protein (783aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTI5_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63218.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1518_curated_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9848..10369)
DNA (522bp) protein (174aa)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC87_9RHIZ
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AHB47584.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypoxanthine phosphoribosyltransferase
SCNpilot_cont_1000_p_scaffold_1518_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10366..11094)
DNA (729bp) protein (243aa)
Putative Zinc finger/thioredoxin n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TC53_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDO59261.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1518_curated_13
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11230..11898
DNA (669bp) protein (223aa)
Cell division ATP-binding protein FtsE n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTI1_PARL1
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) {ECO:0000313|EMBL:CDO59262.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein
SCNpilot_cont_1000_p_scaffold_1518_curated_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11900..12811
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ATQ9_AZOBR
Conserved protein {ECO:0000313|EMBL:GAK44444.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
conserved membrane protein of unknown function
SCNpilot_cont_1000_p_scaffold_1518_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12855..13427
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTH9_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFC73144.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_1000_p_scaffold_1518_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13427..14128
DNA (702bp) protein (234aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTH8_PARL1
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ABS63211.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1518_curated_17

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14125..14748
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BLR3 RepID=C0IN61_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACN58747.1}; TaxID=506521 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR3.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1518_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14842..17169
DNA (2328bp) protein (776aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTH7_PARL1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:ABS63210.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1518_curated_19
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17176..17928
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS34883.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
SCNpilot_cont_1000_p_scaffold_1518_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17992..18909)
DNA (918bp) protein (306aa)
prephenate dehydrogenase (EC:1.3.1.12); K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036F5ED9
Prephenate dehydrogenase {ECO:0000313|EMBL:GAK44436.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_1518_curated_21
bacterium YEK0313, Bacteria

Not on your lists

comp(18906..20009)
DNA (1104bp) protein (368aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Histidinol-phosphate aminotransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2NZ79_9RHIZ
SCNpilot_cont_1000_p_scaffold_1518_curated_22
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20193..21347
DNA (1155bp) protein (385aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9J1_MESCW
SCNpilot_cont_1000_p_scaffold_1518_curated_23
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21344..21535
DNA (192bp) protein (64aa)
Methionine biosynthesis protein MetW n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QK21_METTR
Uncharacterized protein {ECO:0000313|EMBL:KJV09667.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
methionine biosynthesis protein MetW
Displaying 23 items

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