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SCNpilot_cont_1000_p_scaffold_1329_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1329_curated_1
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..269
DNA (267bp) protein (89aa)
histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI00037C1C04
SCNpilot_cont_1000_p_scaffold_1329_curated_2
unknown

Not on your lists

526..831
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(828..1658)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRG6_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62499.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1329_curated_4
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1655..1999)
DNA (345bp) protein (115aa)
DnaA n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B6CB8D
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:KIF12877.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
chromosomal replication initiator DnaA domain-containing protein
SCNpilot_cont_1000_p_scaffold_1329_curated_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2139..3086
DNA (948bp) protein (316aa)
ISSpo8, transposase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5F1_9BRAD
ISSpo8, transposase {ECO:0000313|EMBL:EFI51548.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ISSpo8, transposase
SCNpilot_cont_1000_p_scaffold_1329_curated_6
unknown

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3677..4417
DNA (741bp) protein (247aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_7
unknown

Not on your lists

comp(4367..4597)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4941..5429)
DNA (489bp) protein (163aa)
Response regulator receiver domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QAU2_BREDI
Response regulator receiver domain protein {ECO:0000313|EMBL:EKY25061.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
cheYIII; chemotaxis protein cheYIII
SCNpilot_cont_1000_p_scaffold_1329_curated_9
unknown

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5585..5920
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_10
unknown

Not on your lists

6000..6113
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6250..6879)
DNA (630bp) protein (210aa)
nmu:Nmul_A0501 superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=128342 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_1000_p_scaffold_1329_curated_12
unknown

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7104..7322
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_13
unknown

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7469..7675
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_14
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7669..9096)
DNA (1428bp) protein (476aa)
aminotransferase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036B9ECC
BioA protein {ECO:0000313|EMBL:BAQ49040.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
class III aminotransferase
SCNpilot_cont_1000_p_scaffold_1329_curated_15
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9284..10060
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W1S0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGF31191.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
SCNpilot_cont_1000_p_scaffold_1329_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10064..10936)
DNA (873bp) protein (291aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H297_CAUCN
Beta-lactamase {ECO:0000313|EMBL:AJP71071.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_1000_p_scaffold_1329_curated_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11079..12233
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T892_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ69793.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_1329_curated_18
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12337..12960
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXK4_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM75361.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1329_curated_19

Not on your lists

13107..13493
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQL4_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KKN46695.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1329_curated_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13668..14216)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000360702E
UPF0114 protein PMI01_04591 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1329_curated_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14313..16703
DNA (2391bp) protein (797aa)
UvrABC system protein B n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVG9_PARL1
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1329_curated_22
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16727..17353)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGJ9_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64303.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_1000_p_scaffold_1329_curated_23
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18239..18577
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S5W8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51151.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_1000_p_scaffold_1329_curated_24
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18729..18983
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERR3_BRASB
hypothetical protein; K15383 MtN3 and saliva related transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38857.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_p_scaffold_1329_curated_25
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19290..19904
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D31892
exoD; putative exopolysaccharide synthesis protein
Uncharacterized protein {ECO:0000313|EMBL:ENA31874.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
SCNpilot_cont_1000_p_scaffold_1329_curated_26
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..20375
DNA (204bp) protein (68aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=F0J0G6_ACIMA
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain-containing protein {ECO:0000313|EMBL:KDM68551.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_1000_p_scaffold_1329_curated_27
unknown

Not on your lists

comp(20439..20885)
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_28
unknown

Not on your lists

21036..21197
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1329_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21269..24031
DNA (2763bp) protein (921aa)
PII uridylyl-transferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ67_PARL1
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 1
SCNpilot_cont_1000_p_scaffold_1329_curated_30
unknown

Not on your lists

24133..24225
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 30 items

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