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SCNpilot_cont_1000_p_scaffold_2128_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2128_curated_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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2..1528
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037622C6
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ABJ88716.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_1000_p_scaffold_2128_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1645..2517
DNA (873bp) protein (291aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSU5_PARL1
histidine kinase
SCNpilot_cont_1000_p_scaffold_2128_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2514..4247
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSU6_PARL1
hypothetical protein; K06915
Uncharacterized protein {ECO:0000313|EMBL:ABS62979.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2128_curated_4
R_WOR_2_50_17, WOR-2, Bacteria

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4293..5015
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036DD773
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
SCNpilot_cont_1000_p_scaffold_2128_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5283..6431)
DNA (1149bp) protein (383aa)
2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
dCTP deaminase {ECO:0000313|EMBL:ABG61502.1}; EC=3.5.4.13 {ECO:0000313|EMBL:ABG61502.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
dCTP deaminase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M73_MESSB
SCNpilot_cont_1000_p_scaffold_2128_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6407..9229)
DNA (2823bp) protein (941aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
Helicase c2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ70_PARL1
Helicase c2 {ECO:0000313|EMBL:ABS62053.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2128_curated_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9277..11373)
DNA (2097bp) protein (699aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Sensor histidine kinase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRI2_RHOCS
sensor histidine kinase
SCNpilot_cont_1000_p_scaffold_2128_curated_8
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11464..13044
DNA (1581bp) protein (527aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
lysS; lysyl-tRNA synthetase; K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z852_AZOL4
SCNpilot_cont_1000_p_scaffold_2128_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13041..13811
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ74_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62057.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2128_curated_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13882..14517)
DNA (636bp) protein (212aa)
Putative peptidase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3M8_AZOL4
putative peptidase
Putative peptidase {ECO:0000313|EMBL:CBS87992.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_1000_p_scaffold_2128_curated_11
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14649..15734
DNA (1086bp) protein (362aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
pyrD; dihydroorotate oxidase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVA9_RHOCS
SCNpilot_cont_1000_p_scaffold_2128_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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15771..16277
DNA (507bp) protein (169aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ84_PARL1
TetR family transcriptional regulator {ECO:0000313|EMBL:GAK45577.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
TetR family transcriptional regulator
Displaying 12 items

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