ggKbase home page

SCNpilot_cont_1000_p_scaffold_2196_curated_25

Organism: scnpilot_dereplicated_Alphaproteobacteria_2

partial RP 38 / 55 BSCG 39 / 51 MC: 1 ASCG 10 / 38
Location: 12396..13412

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.9
  • Coverage: 338.0
  • Bit_score: 556
  • Evalue 2.20e-155
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 79.6
  • Coverage: 338.0
  • Bit_score: 555
  • Evalue 1.10e-155
DNA-directed RNA polymerase subunit alpha n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOA_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 79.9
  • Coverage: 338.0
  • Bit_score: 556
  • Evalue 1.60e-155
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
ATGTTTCAGAAAAACTGGCAGGAACTGATCAAGCCGCAGAAGCTCAAGACCGATGCCGGGCACGAGCCGGGCCGCGTCGCCACCATCGTCGCCGAACCGCTGGAGCGCGGCTTCGGTCTGACCCTGGGCAATTCGCTGCGCCGCGTGCTGCTGTCCTCGCTGCAGGGCGCCGCCATCACCGCTATCTCGATCGAGGGCGTCCTGCACGAATTCTCCTCGATTCAGGGCGTGCGCGAAGACGTCACCGACATCGTCCTGAACGTGAAGATGATCGCACTGCGCATGCATGCCGAAGGTCCCAAGCGCGTCAGCCTGCGCAAGCAGGGTCCGGGCGAGGTGAGGGCCGGCGACATCCAGGCCACATCCGACATCGAAGTGCTCAATCCCGATCTCGTCATCTGCACGCTGGACGAGAAGGTCGATTTTCGCATGGAGCTGACGGTCAATACCGGCAAGGGCTATGTACCCGCCGACCGCAATCGCCCGGAAGACGCGCCCATCGGCCTGATCCCGGTCGATAGCCTGTTCAGCCCGGTAAAGAAGGTCTCCTACAAGGTGGAGAACACCCGCGAAGGCCAGATCCTGGATTACGACAAGCTGACCCTGACGGTGGAAACCAACGGCGCCGTGACCCCGGACAATGCCGTCGCCTATGCTGCGCGCATCCTGCAGGACCAGCTCCAGGTCTTCATCAACTTCGAAGAGCCGCAGCTGCGTACCACCGAAGAGGCCAAGCCGGACCTCGCCTTCAACCCCGTCCTGCTCAAGAAGGTGGACGAGCTGGAACTGTCGGTGCGTTCGGCCAACTGCCTGAAGAACGACAACATCGTTTATATCGGCGACCTGATCCAGAAGACCGAGGCGGAGATGCTGCGCACCCCGAACTTCGGCCGCAAGTCGCTGAACGAGATCAAGGCGGTTCTGGCCGAGATGGGCCTGCACCTGGGCATGGAAGTGCCTGGCTGGCCGCCGGAGAATATCGAAGATCTCGCCAAGCGCTACGAAGACCAATACTGA
PROTEIN sequence
Length: 339
MFQKNWQELIKPQKLKTDAGHEPGRVATIVAEPLERGFGLTLGNSLRRVLLSSLQGAAITAISIEGVLHEFSSIQGVREDVTDIVLNVKMIALRMHAEGPKRVSLRKQGPGEVRAGDIQATSDIEVLNPDLVICTLDEKVDFRMELTVNTGKGYVPADRNRPEDAPIGLIPVDSLFSPVKKVSYKVENTREGQILDYDKLTLTVETNGAVTPDNAVAYAARILQDQLQVFINFEEPQLRTTEEAKPDLAFNPVLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKAVLAEMGLHLGMEVPGWPPENIEDLAKRYEDQY*