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SCNpilot_cont_1000_p_scaffold_2196_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2196_curated_1
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..564
DNA (564bp) protein (188aa)
50S ribosomal protein L3 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZS4_RHOVT
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


568..1185
DNA (618bp) protein (206aa)
50S ribosomal protein L4 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6CDD3
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1182..1469
DNA (288bp) protein (96aa)
50S ribosomal protein L23 n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UDA8_9RHOB
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_cont_1000_p_scaffold_2196_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1471..2307
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RL2_PARL1 rbh
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2304..2588
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF21_9RHOB
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_cont_1000_p_scaffold_2196_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2589..3074
DNA (486bp) protein (162aa)
50S ribosomal protein L22 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JV20_HYPDA
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_7
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3074..3796
DNA (723bp) protein (241aa)
30S ribosomal protein S3 n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YM74_9BRAD
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_1000_p_scaffold_2196_curated_8
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3809..4222
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Kaistia granuli RepID=UPI00037397E5
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_cont_1000_p_scaffold_2196_curated_9
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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4234..4497
DNA (264bp) protein (88aa)
50S ribosomal protein L29 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUU5_POLGS
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_10
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4502..4741
DNA (240bp) protein (80aa)
30S ribosomal protein S17 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FABD36
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_11
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4763..5131
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C5210
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_p_scaffold_2196_curated_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5132..5446
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=RL24_BEII9
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_1000_p_scaffold_2196_curated_13
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5439..6116
DNA (678bp) protein (226aa)
50S ribosomal protein L5 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A3095E
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_cont_1000_p_scaffold_2196_curated_14
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6124..6429
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P2U9_9CAUL
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_cont_1000_p_scaffold_2196_curated_15
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6442..6834
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS8_HYPNA
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_1000_p_scaffold_2196_curated_16
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6845..7378
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZT9_RHOVT
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_1000_p_scaffold_2196_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7380..7727
DNA (348bp) protein (116aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I4_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000313|EMBL:AJP74560.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_1000_p_scaffold_2196_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7789..8388
DNA (600bp) protein (200aa)
30S ribosomal protein S5 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS5_PARL1
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_19
unknown

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8401..8595
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003682699
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
SCNpilot_cont_1000_p_scaffold_2196_curated_20
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8650..9201
DNA (552bp) protein (184aa)
50S ribosomal protein L15 n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036653C4
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_p_scaffold_2196_curated_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9307..10647
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWT1_PARL1
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2196_curated_22
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10644..11222
DNA (579bp) protein (193aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinu
adk; adenylate kinase Adk (EC:2.7.4.3)
adenylate kinase n=1 Tax=Rhizobium meliloti RepID=UPI00037E4A47
SCNpilot_cont_1000_p_scaffold_2196_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11499..11876
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZD2_BREDI
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
30S ribosomal protein S13
SCNpilot_cont_1000_p_scaffold_2196_curated_24
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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11878..12276
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RS11_PHEZH
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_cont_1000_p_scaffold_2196_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12396..13412
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOA_PARL1 rbh
SCNpilot_cont_1000_p_scaffold_2196_curated_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13433..13855
DNA (423bp) protein (141aa)
50S ribosomal protein L17 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=RL17_METS4
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_1000_p_scaffold_2196_curated_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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14003..15517
DNA (1515bp) protein (505aa)
Periplasmic serine protease, Do n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y210_9PROT
Protease Do {ECO:0000313|EMBL:GAK46404.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
protease Do
SCNpilot_cont_1000_p_scaffold_2196_curated_28
unknown

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15694..15792
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 28 items

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