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SCNpilot_cont_1000_p_scaffold_1699_curated_7

Organism: scnpilot_dereplicated_Alphaproteobacteria_2

partial RP 38 / 55 BSCG 39 / 51 MC: 1 ASCG 10 / 38
Location: comp(10272..10847)

Top 3 Functional Annotations

Value Algorithm Source
extracytoplasmic-function sigma-70 factor n=2 Tax=Herbaspirillum seropedicae RepID=UPI00036162F3 similarity UNIREF
DB: UNIREF100
  • Identity: 55.9
  • Coverage: 177.0
  • Bit_score: 190
  • Evalue 2.20e-45
Two-component system regulatory protein {ECO:0000313|EMBL:EIL93761.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.7
  • Coverage: 176.0
  • Bit_score: 171
  • Evalue 8.60e-40
two-component system regulatory protein similarity KEGG
DB: KEGG
  • Identity: 47.6
  • Coverage: 164.0
  • Bit_score: 146
  • Evalue 1.10e-32

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGGGCGGGCACCAGGTCGATAATTGGTTCATGCAGGAAGTCTTACCCCTCGAAGGCGCGTTGACGCGCTTTCTCCAGCGTCATTGGCGTCAGTCGGCGGATATCGCGGATCTGCGGCAGGAGACCTATGCCCGGGCCTATGAAGCGGCCCTGCGCGAGCGGCCGGAGCGGATCAAGCCGTTCCTGTTCCAGATCGCCCGCAACCTGATGATCGACCGGGTGCGGCGTCAAAGTGTCGTCTCTCTGGAAACGATGGCGGATTTCGACTGGCTGAACGTCTCCGATGATGGGCCGTCCCTGGAACGTCACATCGCTGCGCGTCAGCAGCTGCGGCTGTTGCAGCGGGCCCTGGATGAGTTGCCGCCTCGCTGTCGCCAGATCGTCGTGATGCGCAAGGTAGATGGCCTGTCGCAGAAGGAAGTGGCGGCGCGCATGGGCATCGCGGTGGAGACAGTGGAAAATCAGGTTGCCAAGGGCATGCGGGTACTGGCACAGGCGATGGGCGGACGGCGCGGCACGGTGACCAGCCAGGCGCGGCGCTACAATTTCTTCAGGAAACTGCGCGATGTCCGCTGA
PROTEIN sequence
Length: 192
MGGHQVDNWFMQEVLPLEGALTRFLQRHWRQSADIADLRQETYARAYEAALRERPERIKPFLFQIARNLMIDRVRRQSVVSLETMADFDWLNVSDDGPSLERHIAARQQLRLLQRALDELPPRCRQIVVMRKVDGLSQKEVAARMGIAVETVENQVAKGMRVLAQAMGGRRGTVTSQARRYNFFRKLRDVR*