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SCNpilot_cont_1000_p_scaffold_1699_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1699_curated_1
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..476)
DNA (474bp) protein (158aa)
tryptophan halogenase; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7]
Tryptophan halogenase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U2I3_9RHOB
Tryptophan halogenase {ECO:0000313|EMBL:EAQ01557.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_cont_1000_p_scaffold_1699_curated_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(497..3376)
DNA (2880bp) protein (960aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K4G3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31499.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
TonB-dependent receptor-like protein
SCNpilot_cont_1000_p_scaffold_1699_curated_3
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3802..4923
DNA (1122bp) protein (374aa)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192};; TaxID=487899 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. viticola.;"
arabinogalactan endo-1,4-beta-galactosidase; K01224 arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
Arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LX75_9XANT
SCNpilot_cont_1000_p_scaffold_1699_curated_4
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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4982..6082
DNA (1101bp) protein (367aa)
Glycosyl transferase family 28 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXU8_OPITP
glycosyl transferase family protein
Glycosyl transferase family 28 {ECO:0000313|EMBL:ACB75150.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_1699_curated_5
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6054..9290)
DNA (3237bp) protein (1079aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K4G3_9SPHN
TonB-dependent receptor-like protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_1000_p_scaffold_1699_curated_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9338..10282)
DNA (945bp) protein (315aa)
FecR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3B4_9SPHN
DNA, contig: SP664 {ECO:0000313|EMBL:GAN15747.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
anti-feci sigma factor, fecr; K07165 transmembrane sensor
SCNpilot_cont_1000_p_scaffold_1699_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10272..10847)
DNA (576bp) protein (192aa)
extracytoplasmic-function sigma-70 factor n=2 Tax=Herbaspirillum seropedicae RepID=UPI00036162F3
Two-component system regulatory protein {ECO:0000313|EMBL:EIL93761.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
two-component system regulatory protein
SCNpilot_cont_1000_p_scaffold_1699_curated_8
unknown

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comp(11001..11090)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1699_curated_9
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11087..12028)
DNA (942bp) protein (314aa)
Pass1-related protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AUI1_9CAUL
Pass1-related protein {ECO:0000313|EMBL:GAD58373.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
transcription factor jumonji domain-containing protein
SCNpilot_cont_1000_p_scaffold_1699_curated_10
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(12549..13652)
DNA (1104bp) protein (368aa)
D-mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FA73D
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_cont_1000_p_scaffold_1699_curated_11
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13682..15727)
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NQ35_GRAMM
Uncharacterized protein {ECO:0000313|EMBL:KEJ90787.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1699_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15727..17286)
DNA (1560bp) protein (520aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate protein domain protein TPP-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR45_PARL1
Conserved protein {ECO:0000313|EMBL:GAK46103.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_1699_curated_13
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17314..18066)
DNA (753bp) protein (251aa)
putative aldolase; K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
Putative aldolase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2N1_CALAS
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:KJK20524.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_cont_1000_p_scaffold_1699_curated_14
unknown

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18370..18705
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1699_curated_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18778..19638)
DNA (861bp) protein (287aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCF7_METS4
Displaying 15 items

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