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SCNpilot_cont_300_bf_scaffold_987_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_987_curated_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164..1117
DNA (954bp) protein (318aa)
Bll7861 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CD6_BRADU
rhizopine catabolism protein rbh
Putative rhizopine catabolism protein {ECO:0000313|EMBL:BAR55254.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_300_bf_scaffold_987_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1056..1646)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E85A83
Transcriptional regulator {ECO:0000313|EMBL:KIZ33038.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_987_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2146..4221
DNA (2076bp) protein (692aa)
Elongation factor G n=1 Tax=Oceanibaculum indicum P24 RepID=K2IU57_9PROT
fusA; elongation factor EF-G; K02355 elongation factor G
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_4
unknown

Not on your lists

4488..4610
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_987_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4883..5422
DNA (540bp) protein (180aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5455..5967
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y259_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6047..7021
DNA (975bp) protein (325aa)
Dihydroxyacid dehydratase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQS5_9PROT
putative sulfite oxidase subunit YedY; K07147
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_8
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7130..8101
DNA (972bp) protein (324aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000369321A
Uncharacterized protein {ECO:0000313|EMBL:EJE54524.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_987_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8162..8923
DNA (762bp) protein (254aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
luciferase-like monooxygenase id=4793474 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8928..9302
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhodococcus opacus RepID=UPI00029CB52B
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..10551
DNA (1167bp) protein (389aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00036328B1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10548..11705
DNA (1158bp) protein (386aa)
L-carnitine dehydratase/bile acid-inducible protein F; K07749 formyl-CoA transferase [EC:2.8.3.16]
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=D5ZRR2_9ACTO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11838..12716)
DNA (879bp) protein (293aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13124..14014)
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H8X0_9PROT
transcriptional regulator, LysR family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14042..15013)
DNA (972bp) protein (324aa)
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRI4_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15191..15667
DNA (477bp) protein (159aa)
Transcriptional regulator n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W9K6_MAGSA
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_17

Not on your lists

comp(15689..16111)
DNA (423bp) protein (141aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PilT protein domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP49_XANP2
PilT domain-containing protein; K07062
SCNpilot_cont_300_bf_scaffold_987_curated_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16111..16413)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QFE6_RHOPT
Uncharacterized protein {ECO:0000313|EMBL:AIC29514.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_987_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16564..17139
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRA2_9BRAD
intracellular septation protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17160..17633)
DNA (474bp) protein (158aa)
transcription elongation factor GreA n=1 Tax=Novispirillum itersonii RepID=UPI0003655E4F
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17727..20972)
DNA (3246bp) protein (1082aa)
carB; carbamoyl phosphate synthase, large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2F5_AZOL4
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20980..22164)
DNA (1185bp) protein (395aa)
carA; carbamoyl-phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INY3_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22369..22824
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZSK7_9PROT
hypothetical protein; K09117 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22852..23229
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3B3_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KGT80994.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_987_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23439..25319
DNA (1881bp) protein (627aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MM70_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25497..27530
DNA (2034bp) protein (678aa)
RNA polymerase sigma factor RpoD n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H8N4_9PROT
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_987_curated_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27539..28186
DNA (648bp) protein (216aa)
Hly-III family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UR11_METS4
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48096.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Hly-III family protein; K11068 hemolysin III
SCNpilot_cont_300_bf_scaffold_987_curated_28
unknown

Not on your lists

comp(28219..28521)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_987_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28619..29272)
DNA (654bp) protein (218aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPH6_9RHIZ
Glutathione S-transferase {ECO:0000313|EMBL:EHK57348.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_300_bf_scaffold_987_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29552..30001
DNA (450bp) protein (150aa)
MarR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPH7_9RHIZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EHK57349.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator
Displaying items 1-30 of 35 in total

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