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SCNpilot_cont_300_bf_scaffold_2164_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2164_curated_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..441
DNA (441bp) protein (147aa)
ABC transporter substrate-binding protein, putative branched-chain amino acid transport system n=2 Tax=Oligotropha carboxidovorans RepID=B6JE78_OLICO
twin-arginine translocation pathway signal; K01999 branched-chain amino acid transport system substrate-binding protein
ABC transporter substrate-binding protein, putative branched-chain amino acid transport system {ECO:0000313|EMBL:AEI05935.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_2164_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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448..1326
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E5E436
Uncharacterized protein {ECO:0000313|EMBL:EKS41692.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_2164_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1337..2374
DNA (1038bp) protein (346aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI000303AB64
Uncharacterized protein {ECO:0000313|EMBL:EKS41693.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter permease protein, putative branched-chain amino acid transport; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_2164_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2371..3162
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLN7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41694.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter ATP-binding protein, putative branched-chain amino acid transport; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_2164_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3162..3881
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQ91_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41695.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_2164_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3919..4218
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJH7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41696.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2164_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4233..5345
DNA (1113bp) protein (371aa)
alcohol dehydrogenase, putative class 3; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
alcohol dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002F1B4AF
Uncharacterized protein {ECO:0000313|EMBL:EKS41697.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_2164_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5436..6122)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTL3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41698.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2164_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6352..8460
DNA (2109bp) protein (703aa)
Pyrrolo-quinoline quinone; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
Methanol/ethanol family PQQ-dependent dehydrogenase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ84_9BRAD
Methanol/ethanol family PQQ-dependent dehydrogenase {ECO:0000313|EMBL:EKS38428.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_2164_curated_10
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8533..9120)
DNA (588bp) protein (196aa)
Putative flavoprotein n=1 Tax=Polaromonas sp. CF318 RepID=J2LCD4_9BURK
Putative flavoprotein {ECO:0000313|EMBL:EJL89865.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
nadph-dependent fmn reductase
SCNpilot_cont_300_bf_scaffold_2164_curated_11
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9146..10003)
DNA (858bp) protein (286aa)
Pirin like protein n=1 Tax=Ralstonia solanacearum RepID=D8MZV8_RALSL
Pirin {ECO:0000313|EMBL:KHK49458.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
pirin
SCNpilot_cont_300_bf_scaffold_2164_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10141..11025
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ44_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EHK59255.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2164_curated_13
bacterium YEK0313, Bacteria

Not on your lists

11132..12307
DNA (1176bp) protein (392aa)
major facilitator transporter n=1 Tax=Afipia birgiae RepID=UPI000308CD22
Bicyclomycin resistance protein {ECO:0000313|EMBL:CEJ13316.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
drug transporter protein, Bcr/CflA family; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_cont_300_bf_scaffold_2164_curated_14
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13077..13925)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036C1DBF
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EIG63582.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2164_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..14265)
DNA (180bp) protein (60aa)
Protein-L-isoaspartate carboxylmethyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQM9_9RHIZ
Protein-L-isoaspartate carboxylmethyltransferase {ECO:0000313|EMBL:EIM26271.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_2164_curated_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(14882..15352)
DNA (471bp) protein (157aa)
Transcriptional regulator, MerR family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3J8_SPHTD
transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACZ38815.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Displaying 16 items

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