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SCNpilot_cont_300_bf_scaffold_655_curated

Search features with annotation key words

Displaying items 31-60 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_655_curated_31
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32549..33388)
-----------------
DNA (840bp)
protein (280aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035F4987
amidohydrolase 2; K07046
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_32
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33502..33966
-----------------
DNA (465bp)
protein (155aa)
tRNA proofreading protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDU4_9RHOB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_33
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33971..34945)
-----------------
DNA (975bp)
protein (325aa)
Putative oxidoreductase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZI6_ANATU
putative oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_34
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34942..36174)
-----------------
DNA (1233bp)
protein (411aa)
Putative uncharacterized protein n=1 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UEX1_9PROT
putative Permease of the major facilitator superfamily
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_35
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36178..37842
-----------------
DNA (1665bp)
protein (555aa)
betA; choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
Choline dehydrogenase, a flavoprotein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWQ9_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_36
Pseudomonas sp. 5, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37859..38614)
-----------------
DNA (756bp)
protein (252aa)
Class II Aldolase/Adducin Family Protein n=1 Tax=Pseudomonas sp. UW4 RepID=K9NGT4_9PSED
Aldolase {ECO:0000313|EMBL:KJK05884.1}; TaxID=1619949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 5.;"
Class II Aldolase/Adducin Family Protein
SCNpilot_cont_300_bf_scaffold_655_curated_37
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38629..39603)
-----------------
DNA (975bp)
protein (325aa)
Twin-arginine translocation pathway signal n=2 Tax=Alicycliphilus denitrificans RepID=E8TUP2_ALIDB
twin-arginine translocation pathway signal protein
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:GAO26021.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_655_curated_38
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39656..40633)
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UM28_ALCFA
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGP01636.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
extra-cytoplasmic solute receptor
SCNpilot_cont_300_bf_scaffold_655_curated_39
unknown

Not on your lists

comp(40807..41007)
-----------------
DNA (201bp)
protein (67aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_655_curated_40
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41027..41989)
-----------------
DNA (963bp)
protein (321aa)
Peptide chain release factor 2 (RF-2) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F0I9_9PROT
prfB; translation peptide chain release factor 2; K02836 peptide chain release factor 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_41
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42225..44684)
-----------------
DNA (2460bp)
protein (820aa)
penicillin-binding protein 1A (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A n=2 Tax=Rhodospirillum rubrum RepID=G2TD49_RHORU
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_42
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44743..45612)
-----------------
DNA (870bp)
protein (290aa)
amiB; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INB4_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_43
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46107..49121
-----------------
DNA (3015bp)
protein (1005aa)
ribonuclease, Rne/Rng family; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZS7_9RHIZ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_44
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49200..50165
-----------------
DNA (966bp)
protein (322aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2G3N3_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESH87848.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
extra-cytoplasmic solute receptor family protein 68
SCNpilot_cont_300_bf_scaffold_655_curated_45
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50336..53587
-----------------
DNA (3252bp)
protein (1084aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI000370A947
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAM98113.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
putative sensor histidine kinase with a response regulator receiver domain
SCNpilot_cont_300_bf_scaffold_655_curated_46
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53639..53920
-----------------
DNA (282bp)
protein (94aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D2Q5_BRAJP
transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAL11916.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_655_curated_47
unknown

Not on your lists

comp(53934..54347)
-----------------
DNA (414bp)
protein (138aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_655_curated_48
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54437..55867
-----------------
DNA (1431bp)
protein (477aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2N2_9PROT
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:EHL99616.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_300_bf_scaffold_655_curated_49
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55903..57072)
-----------------
DNA (1170bp)
protein (390aa)
mannose-6-phosphate isomerase (EC:5.3.1.8); K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]
mannose-6-phosphate isomerase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003615404
N-acyl-D-glucosamine 2-epimerase {ECO:0000313|EMBL:EJL25385.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_655_curated_50
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57238..58734)
-----------------
DNA (1497bp)
protein (499aa)
betaine-aldehyde dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D54218
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49290.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative betaine aldehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_655_curated_51
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58748..60244)
-----------------
DNA (1497bp)
protein (499aa)
aldehyde dehydrogenase (acceptor); K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
UPI0003D1C0CA related cluster n=1 Tax=unknown RepID=UPI0003D1C0CA
Contig28, whole genome shotgun sequence {ECO:0000313|EMBL:ETA50624.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
SCNpilot_cont_300_bf_scaffold_655_curated_52
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60407..60805
-----------------
DNA (399bp)
protein (133aa)
Transcriptional regulator ModE n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IPA1_RHOCS
modE; transcriptional regulator ModE; K02019 molybdate transport system regulatory protein
Transcriptional regulator ModE {ECO:0000313|EMBL:ACI99603.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_300_bf_scaffold_655_curated_53
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60899..61279
-----------------
DNA (381bp)
protein (127aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003623722
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM90136.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_300_bf_scaffold_655_curated_54
unknown

Not on your lists

61290..61688
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_655_curated_55
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61672..62463)
-----------------
DNA (792bp)
protein (264aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVD5_9RHIZ
Molybdenum ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EIM27927.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
modA; molybdenum ABC transporter, periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_56
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62634..62840
-----------------
DNA (207bp)
protein (69aa)
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI000376C663
Transporter {ECO:0000313|EMBL:KDP72940.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
molybdo-pterin binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_57
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62850..63347
-----------------
DNA (498bp)
protein (166aa)
virR n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B7F07
VirR {ECO:0000313|EMBL:ETR78213.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_655_curated_58
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63344..64378
-----------------
DNA (1035bp)
protein (345aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003788975
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM32606.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_59
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64386..65387
-----------------
DNA (1002bp)
protein (334aa)
ABC transporter permease protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JBX3_OLICO
ABC transporter permease; K02015 iron complex transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:AEI07597.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_655_curated_60
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65393..66160
-----------------
DNA (768bp)
protein (256aa)
ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWN8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33596.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Displaying items 31-60 of 105 in total

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