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SCNpilot_cont_300_bf_scaffold_655_curated

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Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_655_curated_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..440
DNA (438bp) protein (146aa)
Family 5 extracellular solute-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J0P8_9PROT
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:EKE76496.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dipeptide ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

458..1921
DNA (1464bp) protein (488aa)
Amidohydrolase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPM1_9PROT
Amidohydrolase {ECO:0000313|EMBL:EKE76497.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_655_curated_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2019..3032
DNA (1014bp) protein (338aa)
Oligopeptide/dipeptide ABC transporter ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JMD3_9PROT
Oligopeptide/dipeptide ABC transporter ATPase {ECO:0000313|EMBL:EKE76498.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3029..4096
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035FB4BE
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETR74734.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_655_curated_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4093..5115)
DNA (1023bp) protein (341aa)
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
trxB; thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Ferredoxin--NADP reductase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IW45_RHOCS
SCNpilot_cont_300_bf_scaffold_655_curated_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5322..6560)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIE0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06228.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_655_curated_7
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6625..7632)
DNA (1008bp) protein (336aa)
MFS transporter n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3R1H8_RALPI
MFS transporter {ECO:0000313|EMBL:AGW94257.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_655_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7686..8048)
DNA (363bp) protein (121aa)
Glyoxalase family protein n=1 Tax=Prevotella buccae D17 RepID=D3HXJ8_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8045..9175)
DNA (1131bp) protein (377aa)
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=MNMA_RHOCS rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9246..9773)
DNA (528bp) protein (176aa)
membrane protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037BE4B3
Outer membrane protein; K06077 outer membrane lipoprotein SlyB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9822..10406)
DNA (585bp) protein (195aa)
Rickettsia 17 kDa surface antigen n=1 Tax=Gallibacterium anatis (strain UMN179) RepID=F4HCP6_GALAU
Rickettsia 17 kDa surface antigen; K06077 outer membrane lipoprotein SlyB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10498..10704)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M7R0_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10716..11051)
DNA (336bp) protein (112aa)
2Fe-2S ferredoxin id=2439379 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
ferredoxin
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11071..12966)
DNA (1896bp) protein (632aa)
Chaperone protein HscA homolog n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LQ11_9PROT
hscA; chaperone protein HscA; K04044 molecular chaperone HscA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12963..13475)
DNA (513bp) protein (171aa)
Co-chaperone protein HscB homolog n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQI4_PHAMO
DnaJ-domain-containing protein; K04082 molecular chaperone HscB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13485..13883)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TI42_PHAFV
hypothetical protein; K13628 iron-sulfur cluster assembly protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13903..14310)
DNA (408bp) protein (136aa)
NifU homolog involved in Fe-S cluster formation n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U0G9_9PROT
scaffold protein; K04488 nitrogen fixation protein NifU and related proteins
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14367..15605)
DNA (1239bp) protein (413aa)
cysteine sulfinate desulfinase/cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2U3_MAGSA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15624..16742)
DNA (1119bp) protein (373aa)
cysteine sulfinate desulfinase/cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2U2_MAGSA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16758..17234)
DNA (477bp) protein (159aa)
Transcriptional regulator n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TTV2_PHAFV
iscR; transcriptional repressor of Fe-S cluster biogenesis genes
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17471..18145
DNA (675bp) protein (225aa)
alpha/beta hydrolase n=1 Tax=Novispirillum itersonii RepID=UPI0003656338
alpha/beta hydrolase; K07018
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18177..19226)
DNA (1050bp) protein (350aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=431944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1.;"
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase n=2 Tax=Magnetospirillum gryphiswaldense MSR-1 RepID=V6EY35_9PROT
SCNpilot_cont_300_bf_scaffold_655_curated_23
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19395..20648
DNA (1254bp) protein (418aa)
tyrS1; tyrosine tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Tyrosine--tRNA ligase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9P7_AZOL4
SCNpilot_cont_300_bf_scaffold_655_curated_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20685..23858)
DNA (3174bp) protein (1058aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KMP0_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23907..26864
DNA (2958bp) protein (986aa)
glutamine synthetase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FRM8_PHAMO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_655_curated_26
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26861..27325
DNA (465bp) protein (155aa)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:BAQ16121.1}; EC=1.11.1.15 {ECO:0000313|EMBL:BAQ16121.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
bcp; bacterioferritin comigratory protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036851DC
SCNpilot_cont_300_bf_scaffold_655_curated_27
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27397..30336)
DNA (2940bp) protein (980aa)
Putative protease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I456_AZOC5
protease
Putative protease {ECO:0000313|EMBL:BAF87690.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_655_curated_28
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30445..31332)
DNA (888bp) protein (296aa)
Uroporphyrinogen-III synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEX7_9BRAD
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR77128.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cmpR; LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_655_curated_29
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31439..32107
DNA (669bp) protein (223aa)
phosphinothricin acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031C759C
GCN5 family acetyltransferase {ECO:0000313|EMBL:ETR77127.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_300_bf_scaffold_655_curated_30
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32097..32552)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003606B1D
Aha1 domain-containing protein
Aha1 domain family protein {ECO:0000313|EMBL:ABF88378.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
Displaying items 1-30 of 105 in total

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